Browse Element(s) Details


OsAffx.19714.1.S1_at

Description tigr:9640.m01697
TID=OsAffx.19714.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1733011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17300OsAffx.21897.5.S1_x_at4/1112+9898465..9901422retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17310Os.15013.1.S1_at11/1112+9904893..9912468myosin heavy chain, putative, expressed
LOC_Os12g17320Os.57327.1.S1_at11/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17320Os.22579.1.S1_at11/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17320Os.38751.1.A1_at4/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17330OsAffx.19714.1.S1_at11/1112+9923165..9923641hypothetical protein
LOC_Os12g17340OsAffx.19715.1.S1_at11/1112+9923982..9926400Leucine Rich Repeat family protein
LOC_Os12g17340OsAffx.21371.1.S1_at2/1112+9923982..9926400Leucine Rich Repeat family protein
LOC_Os12g17350NANA12+9929934..9933040retrotransposon protein, putative, unclassified
LOC_Os12g17360OsAffx.8965.1.S1_at5/1112+9938586..9942053retrotransposon protein, putative, unclassified
LOC_Os12g17360Os.27691.2.S1_x_at1/1112+9938586..9942053retrotransposon protein, putative, unclassified
LOC_Os12g17370OsAffx.19716.1.S1_at10/1112+9944312..9946167hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19714.1.S1_at--236--9731Chr12:9923547..9923571 (25 bp)
TCAAGTTGAATTCACAGCATGCCCC
LOC_Os12g17330
OsAffx.19714.1.S1_at--1158--8031Chr12:9923519..9923543 (25 bp)
GGAGAGGCTTATCATCAGCAGTCAA
LOC_Os12g17330
OsAffx.19714.1.S1_at--1055--5011Chr12:9923502..9923526 (25 bp)
GCAGTCAACAAATCCGGTGCCTGAA
LOC_Os12g17330
OsAffx.19714.1.S1_at--1157--5391Chr12:9923463..9923487 (25 bp)
GAAGCTATTATCACGGTGGCGGGCT
LOC_Os12g17330
OsAffx.19714.1.S1_at--851--2291Chr12:9923378..9923402 (25 bp)
AACAGGGTCCAAGATCGGTTTTGAG
LOC_Os12g17330
OsAffx.19714.1.S1_at--928--8891Chr12:9923357..9923381 (25 bp)
TGAGTTCGGATTCGAGCACCTCGCA
LOC_Os12g17330
OsAffx.19714.1.S1_at--109--2651Chr12:9923333..9923357 (25 bp)
AAGCCTCCAGCAACTTAGTGTCACG
LOC_Os12g17330
OsAffx.19714.1.S1_at--333--10451Chr12:9923319..9923343 (25 bp)
TTAGTGTCACGGTCGATTGCCGAGG
LOC_Os12g17330
OsAffx.19714.1.S1_at--9--711Chr12:9923257..9923281 (25 bp)
ATGAGGGATGCAGCCAGCATTCACC
LOC_Os12g17330
OsAffx.19714.1.S1_at--122--8111Chr12:9923230..9923254 (25 bp)
GGACGCCCTGCGCTTGAGATCAGCA
LOC_Os12g17330
OsAffx.19714.1.S1_at--896--3411Chr12:9923207..9923231 (25 bp)
CAGAAGGTGGGAACGCGACATGATA
LOC_Os12g17330
Target Sequence 
TCAAGTTGAATTCACAGCATGCCCCCGAGGAGAGGCTTATCATCAGCAGTCAACAAATCCGGTGCCTGAAGGGGTTTGAA
TTTGGAAGCTATTATCACGGTGGCGGGCTTGAGATGCTAGCAGAGGAAACAGGGTCCAAGATCGGTTTTGAGTTCGGATT
CGAGCACCTCGCAAGCCTCCAGCAACTTAGTGTCACGGTCGATTGCCGAGGAGCCACGAGGCAGAGGGTGGAGGCTGCGG
AAGCTGCTATGAGGGATGCAGCCAGCATTCACCCTGGACGCCCTGCGCTTGAGATCAGCAGAAGGTGGGAACGCGACATG
ATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19714.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis