Browse Element(s) Details


OsAffx.19738.1.S1_at

Description tigr:9640.m01883
TID=OsAffx.19738.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1904010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19030Os.5842.1.S1_at11/1112+11043065..11054480copine, putative, expressed
LOC_Os12g19040Os.8992.1.S1_at11/1112+11058093..11070851expressed protein
LOC_Os12g19040OsAffx.19738.1.S1_at10/1112+11058093..11070851expressed protein
LOC_Os12g19040Os.50619.1.S1_at1/1112+11058093..11070851expressed protein
LOC_Os12g19070OsAffx.31805.1.S1_at10/1112+11072938..11073902hypothetical protein
LOC_Os12g19080OsAffx.19739.1.S1_at11/1112+11076761..11077419hypothetical protein
LOC_Os12g19090Os.28791.1.A1_at4/1112+11078499..11081000kub3-prov protein, putative, expressed
LOC_Os12g19100NANA12+11082221..11082810transposon protein, putative, unclassified
LOC_Os12g19110OsAffx.19741.1.S1_at11/1112+11088851..11089153hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19738.1.S1_at--630--6151Chr12:11070179..11070203 (25 bp)
GAGGTATGTTAACTATGCCACTTCA
LOC_Os12g19040
OsAffx.19738.1.S1_at--277--591NONE
ATGCCACTTCAATCAGGGACAACCA
NONE
OsAffx.19738.1.S1_at--758--9831Chr12:11065009..11065033 (25 bp)
TAAACCAGAGTTACCCTGACTACCG
LOC_Os12g19040
OsAffx.19738.1.S1_at--1033--6051Chr12:11065002..11065026 (25 bp)
GAGTTACCCTGACTACCGTGTTAAT
LOC_Os12g19040
OsAffx.19738.1.S1_at--1099--5691Chr12:11064992..11065016 (25 bp)
GACTACCGTGTTAATTTACCATGCA
LOC_Os12g19040
OsAffx.19738.1.S1_at--1014--171Chr12:11064979..11065003 (25 bp)
ATTTACCATGCACAAATGCCATCAT
LOC_Os12g19040
OsAffx.19738.1.S1_at--238--2291Chr12:11064966..11064990 (25 bp)
AAATGCCATCATACTTGTCCAAGTA
LOC_Os12g19040
OsAffx.19738.1.S1_at--510--6951Chr12:11064830..11064968 (25 bp)
GTAGACATTTGTGTCCTACCTTCAA
LOC_Os12g19040
OsAffx.19738.1.S1_at--952--10731Chr12:11064822..11064846 (25 bp)
TTGTGTCCTACCTTCAAAATTTAAG
LOC_Os12g19040
OsAffx.19738.1.S1_at--700--11Chr12:11064804..11064828 (25 bp)
ATTTAAGGTCATCTTTTTCTGGCCT
LOC_Os12g19040
OsAffx.19738.1.S1_at--191--3671Chr12:11064792..11064816 (25 bp)
CTTTTTCTGGCCTTACCTTATGCTT
LOC_Os12g19040
Target Sequence 
GAGGTATGTTAACTATGCCACTTCAATCAGGGACAACCAAACCAAGTTGAATAGCGAAACAAAGGAGGATGATTGTAACA
CTCAAAGCGATATTAAAAAGGTATCTAGAAGTGCTCGGCGTAAGAAACTCAAAAGACAACTTAGACAGAAAGCCAAAGAA
CAATTGAAAGAGAAAGAGCACTGTCAAGAACAACCAACCGTGGCTGATTGTCCATCGTCAAACAACCGAGATGTTTTGCC
GTCCCCATCAAGCAATCAAAACAACTCGAGCTTGCCATTTGTAAGGCATGAAGCAGATGAGGAAGAATCTGATACATCGG
ATGATATTGTTCCAGTTGTGGTTAGGCCTGGCCACATTCGCTTTGAGTCAGCAGGAAAAAAAAAGATAAACCAGAGTTAC
CCTGACTACCGTGTTAATTTACCATGCACAAATGCCATCATACTTGTCCAAGTAGACATTTGTGTCCTACCTTCAAAATT
TAAGGTCATCTTTTTCTGGCCTTACCTTATGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis