Browse Element(s) Details


OsAffx.19755.1.S1_at

Description tigr:9640.m01972
TID=OsAffx.19755.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1991011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19870Os.26999.1.A1_at2/1112+11574561..11576807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19870OsAffx.828.1.S1_x_at1/1112+11574561..11576807retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19880OsAffx.31816.1.S1_at11/1112+11580210..11580473hypothetical protein
LOC_Os12g19890OsAffx.31892.1.S1_x_at4/1112+11582991..11586515retrotransposon protein, putative, LINE subclass
LOC_Os12g19890OsAffx.31892.3.S1_at1/1112+11582991..11586515retrotransposon protein, putative, LINE subclass
LOC_Os12g19890OsAffx.6363.1.S1_at1/1112+11582991..11586515retrotransposon protein, putative, LINE subclass
LOC_Os12g19900NANA12+11587270..11593934retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19910OsAffx.19755.1.S1_at11/1112+11600851..11602795hypothetical protein
LOC_Os12g19910Os.18113.1.S1_x_at1/1112+11600851..11602795hypothetical protein
LOC_Os12g19920NANA12+11604973..11609493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19930NANA12+11609819..11614506retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19940NANA12+11617178..11619435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19950NANA12+11621156..11622067retrotransposon protein, putative, unclassified
LOC_Os12g19960NANA12+11622503..11623382hypothetical protein
LOC_Os12g19970NANA12+11623666..11625407retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19980NANA12+11627628..11634296retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19755.1.S1_at--1099--4331Chr12:11601427..11601451 (25 bp)
CCAGGAATTTCTAGCTCGGCTGAAT
LOC_Os12g19910
OsAffx.19755.1.S1_at--1122--1411Chr12:11601393..11601417 (25 bp)
AGAAATGAAGCTCCAAGGCACCCCT
LOC_Os12g19910
OsAffx.19755.1.S1_at--658--5091Chr12:11601376..11601400 (25 bp)
GCACCCCTACTTTTATCCTATGAAG
LOC_Os12g19910
OsAffx.19755.1.S1_at--419--6591Chr12:11601337..11601361 (25 bp)
GATTGACTTCCTCTGTAAAGCAAAG
LOC_Os12g19910
OsAffx.19755.1.S1_at--851--5691Chr12:11601301..11601325 (25 bp)
GACTTTGATCCAGGGCAAGCCTATT
LOC_Os12g19910
OsAffx.19755.1.S1_at--943--2652Chr12:11601285..11601309 (25 bp)
AAGCCTATTCCTGCTGCTTTAAGAA
LOC_Os12g19910
OsAffx.19755.1.S1_at--845--5151Chr12:11601169..11601193 (25 bp)
GCAACCTTTTGAGTCTATTTCACCC
LOC_Os12g19910
OsAffx.19755.1.S1_at--542--6731Chr12:11601117..11601141 (25 bp)
GTTCTACCAATCAATGTGAGGCCCC
LOC_Os12g19910
OsAffx.19755.1.S1_at--717--3071Chr12:11601082..11601106 (25 bp)
AATCAGTGTGGCTAGCCCAATCAGT
LOC_Os12g19910
OsAffx.19755.1.S1_at--254--8191Chr12:11601005..11601029 (25 bp)
GGAAGGCCATTCTCTATAGTCCCTA
LOC_Os12g19910
OsAffx.19755.1.S1_at--318--2351Chr12:11600972..11600996 (25 bp)
AAAGCTCAAGACTTCTGCAGGGTAA
LOC_Os12g19910
Target Sequence 
CCAGGAATTTCTAGCTCGGCTGAATAGAATTGCCAGAAATGAAGCTCCAAGGCACCCCTACTTTTATCCTATGAAGGGAA
TATTGGACAAGATTGACTTCCTCTGTAAAGCAAAGGGCATCATGCAGACTTTGATCCAGGGCAAGCCTATTCCTGCTGCT
TTAAGAATGTCCAACTATTTCTCCACATTGCTCCTGCCAAGGAAGTCCATCTTTGATTCCTCTCCTTCAGTGGGCCAGCA
TGAACCTGAATGGGTTTTGCAACCTTTTGAGTCTATTTCACCCCCTCAGCCGAAAAGGGTGGTTGAGGATGTTCTACCAA
TCAATGTGAGGCCCCCATCTAGCCCAATCAGTGTGGCTAGCCCAATCAGTGTGGCCCCTGTTGCCCTACTTCCCCCCAAG
GCACCTGCAAAGAGGAAAGATGGGAAGGCCATTCTCTATAGTCCCTACAGAAGACAAAGCTCAAGACTTCTGCAGGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis