Browse Element(s) Details


OsAffx.19826.1.S1_at

Description tigr:9640.m02454
TID=OsAffx.19826.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to cysteine proteinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2568010/11Papain family cysteine protease containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25660OsAffx.19825.1.S1_x_at11/1112+14863480..14865154Cytochrome P450 family protein, expressed
LOC_Os12g25670OsAffx.31881.1.S1_at10/1112+14871873..14872340hypothetical protein
LOC_Os12g25680OsAffx.19826.1.S1_at10/1112+14880538..14882879Papain family cysteine protease containing protein
LOC_Os12g25680OsAffx.19826.2.S1_at1/1112+14880538..14882879Papain family cysteine protease containing protein
LOC_Os12g25690Os.10473.1.S1_at11/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25690Os.20425.2.S1_x_at1/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.1.S1_at11/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.2.S1_x_at10/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.2.S1_at7/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.10473.1.S1_at1/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25710Os.6059.1.S1_at11/1112+14894490..14902028Bifunctional aminoacyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19826.1.S1_at--741--8191Chr12:14881088..14881112 (25 bp)
GGAAGTGAAGTACCATGAAGATTGT
LOC_Os12g25680
OsAffx.19826.1.S1_at--365--7711NONE
GGGTGCGGCGGCAGTTTTCTCATAC
NONE
OsAffx.19826.1.S1_at--816--5011Chr12:14882444..14882467 (24 bp)
GCAGTTTTCTCATACGGGCCGACCA
LOC_Os12g25680
OsAffx.19826.1.S1_at--583--9591Chr12:14882452..14882476 (25 bp)
TCATACGGGCCGACCATGGGTGCGA
LOC_Os12g25680
OsAffx.19826.1.S1_at--165--4131Chr12:14882539..14882563 (25 bp)
CGCACCAGCGGCGAGTGAGATGTCA
LOC_Os12g25680
OsAffx.19826.1.S1_at--615--4071Chr12:14882550..14882574 (25 bp)
CGAGTGAGATGTCAAGACCGCTCTT
LOC_Os12g25680
OsAffx.19826.1.S1_at--369--2771Chr12:14882563..14882587 (25 bp)
AAGACCGCTCTTGGCGAGATGACAC
LOC_Os12g25680
OsAffx.19826.1.S1_at--932--671Chr12:14882581..14882605 (25 bp)
ATGACACAAGCGACGGGAAGGGCTC
LOC_Os12g25680
OsAffx.19826.1.S1_at--1065--3531Chr12:14882647..14882671 (25 bp)
CATCGAGGCGCCACGCTCGGTCAGA
LOC_Os12g25680
OsAffx.19826.1.S1_at--29--1331Chr12:14882669..14882693 (25 bp)
AGAGGCCACCTCAGCGTGCGCAAGC
LOC_Os12g25680
OsAffx.19826.1.S1_at--332--4511Chr12:14882721..14882745 (25 bp)
GCCGAGAGCGGTATTGCCCACCACT
LOC_Os12g25680
Target Sequence 
GGAAGTGAAGTACCATGAAGATTGTGGTTCTTGCTGGGCATTCTCCGCCGTGGCGGCGATAGAGGGGATCAACAAGAACG
GCGAGCTGGTGTCGCTGTTGGAGCAGGAGCTCGTGGACTGCGACGACGAGGCCATGGGGTGCGGCGGCAGTTTTCTCATA
CGGGCCGACCATGGGTGCGAGGAAGGAAAGGGTCGCCGACGACGAGTGGTGTGGTGGTGCGGCAACACCGGAGAAGGGGC
GACGCACCAGCGGCGAGTGAGATGTCAAGACCGCTCTTGGCGAGATGACACAAGCGACGGGAAGGGCTCTGCGAGGTTCA
CTGGCACGGGGGACGACGGCGGCTTGGGGGCATCGAGGCGCCACGCTCGGTCAGAGGCCACCTCAGCGTGCGCAAGCAGG
AGGAGCGCTGGCACAAGGTGGCGCGCCGAGAGCGGTATTGCCCACCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19826.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis