Browse Element(s) Details


OsAffx.19842.1.S1_at

Description tigr:9640.m02582
TID=OsAffx.19842.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2689011/11hypothetical protein
LOC_Os09g389403/11hypothetical protein
LOC_Os06g306103/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g130203/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g179603/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g339603/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g261602/11hypothetical protein
LOC_Os11g474452/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g212002/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g218802/11hypothetical protein
LOC_Os11g146801/11hypothetical protein
LOC_Os07g290801/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26860Os.45173.5.S1_x_at4/1112+15734902..15745682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26860Os.47999.2.A1_x_at2/1112+15734902..15745682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26860Os.45173.1.S1_x_at1/1112+15734902..15745682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26860Os.47999.3.A1_x_at1/1112+15734902..15745682retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26870Os.45173.5.S1_x_at4/1112+15746214..15748981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26880OsAffx.19841.1.S1_at10/1112+15755972..15757777Plastocyanin-like domain containing protein, expressed
LOC_Os12g26890OsAffx.19842.1.S1_at11/1112+15760792..15761951hypothetical protein
LOC_Os12g26890OsAffx.18924.2.S1_x_at6/1112+15760792..15761951hypothetical protein
LOC_Os12g26900NANA12+15763121..15764797retrotransposon protein, putative, unclassified
LOC_Os12g26910NANA12+15766239..15766841hypothetical protein
LOC_Os12g26920NANA12+15767690..15769491retrotransposon protein, putative, LINE subclass
LOC_Os12g26930OsAffx.31898.1.S1_at11/1112+15769967..15770413hypothetical protein
LOC_Os12g26940Os.12675.1.S1_at11/1112+15773759..15777216CHASE domain containing protein, expressed
LOC_Os12g26950NANA12+15778274..15780607transposon protein, putative, unclassified
LOC_Os12g26960Os.57289.1.S1_at11/1112+15785858..15786437expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19842.1.S1_at--513--19911Chr12:7217045..7217470 (25 bp)
ACTCCAAGTCCATTTCTCCAATATA
LOC_Os12g13020
OsAffx.19842.1.S1_at--554--9231Chr12:15761884..15761908 (25 bp)
TCCATTTCTCCAATATACATTCCCT
LOC_Os12g26890
OsAffx.19842.1.S1_at--127--251Chr12:15761872..15761896 (25 bp)
ATATACATTCCCTCTTCCATAGGAA
LOC_Os12g26890
OsAffx.19842.1.S1_at--601--6216Chr12:7217094..7217113 (20 bp)
GAGGCTGGACGCCAATTTGATTGCT
LOC_Os12g13020
OsAffx.19842.1.S1_at--1073--3111Chr12:15761835..15761858 (24 bp)
AATTTGATTGCTATCTGGTGTCTGA
LOC_Os12g26890
OsAffx.19842.1.S1_at--1050--9071Chr12:15761690..15761850 (25 bp)
TGCTATCTGGTGTCTGATAAGTCAG
LOC_Os12g26890
OsAffx.19842.1.S1_at--184--4818Chr08:12654341..12654682 (25 bp)
GCTCGATGTCGCTACTGCATTTAAA
LOC_Os08g21200
OsAffx.19842.1.S1_at--744--6910Chr12:7217380..7217721 (25 bp)
ATGTCGCTACTGCATTTAAAAGGTA
LOC_Os12g13020
OsAffx.19842.1.S1_at--921--1831Chr12:15761181..15761205 (25 bp)
ACGCATATACGTCTGCAATAAGTGA
LOC_Os12g26890
OsAffx.19842.1.S1_at--430--4011Chr12:15760895..15761196 (25 bp)
CGTCTGCAATAAGTGACCGCTTCCA
LOC_Os12g26890
OsAffx.19842.1.S1_at--785--1471Chr12:15760822..15760846 (25 bp)
AGAATTACACAATACAATGCAGACA
LOC_Os12g26890
Target Sequence 
ACTCCAAGTCCATTTCTCCAATATACATTCCCTCTTCCATAGGAAGAGGCTGGACGCCAATTTGATTGCTATCTGGTGTC
TGATAAGTCAGCCGAACCACACATACACGCTAGACGAGAAGAAGCTCCTAGAACACATCAAGCTGATGACTCCCGAAGAG
AGGACAGCTTACATAGGACAAAGGCATCAGGAAAGCTGCTCGATGTCGCTACTGCATTTAAAAGGTATTACCAGCGAGGC
GGACAACGCAAAAACTCAAGAGAACGCATATACGTCTGCAATAAGTGACCGCTTCCAAAATTCCCCAAGTCTCAAAGAGA
GCTCGATGATAAATCCATTTTTTTTAGAATTACACAATACAATGCAGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis