Browse Element(s) Details


OsAffx.19859.1.S1_at

Description tigr:9640.m02675
TID=OsAffx.19859.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2782011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g27770OsAffx.31222.2.S1_at8/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27770OsAffx.31222.2.S1_x_at7/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27770OsAffx.31222.1.S1_at4/1112+16367409..16370946transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g27780OsAffx.92.1.S1_at9/1112+16373383..16377656transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27790OsAffx.19858.1.S1_x_at11/1112+16379526..16381318F-box domain containing protein
LOC_Os12g27800Os.46500.1.S1_at1/1112+16384096..16386750transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g27810Os.56315.1.S1_at11/1112+16388718..16390264F-box domain containing protein, expressed
LOC_Os12g27820OsAffx.19859.1.S1_at11/1112+16391531..16391839hypothetical protein
LOC_Os12g27830Os.38999.1.S1_at11/1112+16395541..16398065oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g27840NANA12+16403619..16403921hypothetical protein
LOC_Os12g27850OsAffx.31907.1.S1_at10/1112+16409988..16410903hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19859.1.S1_at--1038--10571Chr12:16391777..16391801 (25 bp)
TTCTCTAGTGACAGTGACACATCCA
LOC_Os12g27820
OsAffx.19859.1.S1_at--137--7371Chr12:16391770..16391794 (25 bp)
GTGACAGTGACACATCCAGCTCCAA
LOC_Os12g27820
OsAffx.19859.1.S1_at--142--7371Chr12:16391764..16391788 (25 bp)
GTGACACATCCAGCTCCAATAGAGA
LOC_Os12g27820
OsAffx.19859.1.S1_at--430--1571Chr12:16391753..16391777 (25 bp)
AGCTCCAATAGAGAACATACGGATT
LOC_Os12g27820
OsAffx.19859.1.S1_at--954--1351Chr12:16391744..16391768 (25 bp)
AGAGAACATACGGATTGAGGCTTGG
LOC_Os12g27820
OsAffx.19859.1.S1_at--358--1051Chr12:16391701..16391725 (25 bp)
AGGTGGTACTTGGTACAAGAGAAGA
LOC_Os12g27820
OsAffx.19859.1.S1_at--506--5311Chr12:16391678..16391702 (25 bp)
GAAGGAGGTTTTTCTGGCACATAGA
LOC_Os12g27820
OsAffx.19859.1.S1_at--130--9471Chr12:16391666..16391690 (25 bp)
TCTGGCACATAGAGGAATGACCATT
LOC_Os12g27820
OsAffx.19859.1.S1_at--188--2991Chr12:16391651..16391675 (25 bp)
AATGACCATTGGTGGCGGTGTGAAC
LOC_Os12g27820
OsAffx.19859.1.S1_at--264--2591Chr12:16391629..16391653 (25 bp)
AACGAGGCAGCGCAGCATTGTAGCT
LOC_Os12g27820
OsAffx.19859.1.S1_at--389--3391Chr12:16391622..16391646 (25 bp)
CAGCGCAGCATTGTAGCTGTGGGAC
LOC_Os12g27820
Target Sequence 
TTCTCTAGTGACAGTGACACATCCAGCTCCAATAGAGAACATACGGATTGAGGCTTGGGGTTTAGATCAGGGTAGGAGGT
GGTACTTGGTACAAGAGAAGAAGGAGGTTTTTCTGGCACATAGAGGAATGACCATTGGTGGCGGTGTGAACGAGGCAGCG
CAGCATTGTAGCTGTGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis