Browse Element(s) Details


OsAffx.19905.1.S1_at

Description tigr:9640.m02960
TID=OsAffx.19905.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3062010/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g30580OsAffx.19904.1.S1_at11/1112+18335742..18336474hypothetical protein
LOC_Os12g30590Os.54180.1.S1_at11/1112+18341141..18345184NB-ARC domain containing protein, expressed
LOC_Os12g30600Os.52564.1.S1_at8/1112+18346327..18353859retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g30610OsAffx.31946.1.S1_at10/1112+18355171..18358705expressed protein
LOC_Os12g30610Os.20626.1.A1_at2/1112+18355171..18358705expressed protein
LOC_Os12g30620OsAffx.19905.1.S1_at10/1112+18359695..18362403pentatricopeptide, putative
LOC_Os12g30630Os.47463.1.S1_x_at5/1112+18366907..18379812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g30630Os.14491.2.S1_x_at3/1112+18366907..18379812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g30630Os.27037.1.A1_at1/1112+18366907..18379812transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g30640OsAffx.19906.1.S1_at11/1112+18383882..18384977ZmEBE-2 protein, putative
LOC_Os12g30650NANA12+18386609..18387421hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19905.1.S1_at--1090--2071Chr12:18360925..18360949 (25 bp)
ACATATGCAGTTCAGCAATCCCCAG
LOC_Os12g30620
OsAffx.19905.1.S1_at--420--9191Chr12:18361068..18361092 (25 bp)
TGCCTGCAGGAAGCATTGCCATGTT
LOC_Os12g30620
OsAffx.19905.1.S1_at--782--3911Chr12:18361145..18361169 (25 bp)
CTGGCAACTATGTTCTCCTCAGAAA
LOC_Os12g30620
OsAffx.19905.1.S1_at--431--5691Chr12:18361554..18361578 (25 bp)
GACTTCCAGTCATTTGCATCTTAAC
LOC_Os12g30620
OsAffx.19905.1.S1_at--514--3951Chr12:18361610..18361634 (25 bp)
CGGTTTCCTCATTGCTACATTTGGA
LOC_Os12g30620
OsAffx.19905.1.S1_at--909--1231NONE
AGTTCCAGAATGCTGTTGCTGTCAG
NONE
OsAffx.19905.1.S1_at--1136--3831Chr12:18361739..18362119 (25 bp)
CTGCTTTCAAGACATGCGACACGTT
LOC_Os12g30620
OsAffx.19905.1.S1_at--590--611Chr12:18362108..18362132 (25 bp)
ATGCGACACGTTTTGGATACCCATC
LOC_Os12g30620
OsAffx.19905.1.S1_at--1146--6471Chr12:18362123..18362143 (21 bp)
GATACCCATCTTCGATGTAGGCTCA
LOC_Os12g30620
OsAffx.19905.1.S1_at--416--6931Chr12:18362241..18362261 (21 bp)
GTAGGCTCAGGCATTTCATCCGAGG
LOC_Os12g30620
OsAffx.19905.1.S1_at--56--6211Chr12:18362258..18362282 (25 bp)
GAGGCACTCCTCAATGTAGTCGAGA
LOC_Os12g30620
Target Sequence 
ACATATGCAGTTCAGCAATCCCCAGACCACTACGCTTGTGTGGTTGATCTATATGGTCGAGCTGGGCTCATTGAAGAAGC
GCACTGTTTCGTGAAGACAATGCCAGTGAAACCACATGCAGGTGTGTGGGGAGCATTGCTCAATGCCTGCAGGAAGCATT
GCCATGTTGATGTCGGTGAGATTGCAGCGAAGGAACTCATCAGGATTGAACCCAAGAATCCTGGCAACTATGTTCTCCTC
AGAAACACCCTAGCTCGAGGCCAGCAATGGGATGCTGTTGAGGATGTGCAGCTATCGATGAGGAGAAAGACTTCCAGTCA
TTTGCATCTTAACGGATTGTGTGCTGAGGATGTTCAGGGGTGCCCGGTTTCCTCATTGCTACATTTGGAAGGAAAGGCAT
TACTTGATAGTTCCAGAATGCTGTTGCTGTCAGATTGTCACATTGGATGTCAAAAGAATATCAAATCTGCTTTCAAGACA
TGCGACACGTTTTGGATACCCATCTTCGATGTAGGCTCAGGCATTTCATCCGAGGCACTCCTCAATGTAGTCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis