Browse Element(s) Details


OsAffx.19915.1.S1_at

Description tigr:9640.m03052
TID=OsAffx.19915.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3153010/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31490Os.12422.1.S1_at11/1112+18910313..18915235expressed protein
LOC_Os12g31499NANA12+18920200..18920980NA
LOC_Os12g31510Os.53621.1.S1_at11/1112+18926126..18927207expressed protein
LOC_Os12g31520NANA12+18930822..18931274hypothetical protein
LOC_Os12g31530OsAffx.19915.1.S1_at10/1112+18934665..18936079hAT family dimerisation domain containing protein
LOC_Os12g31530OsAffx.4453.1.S1_at1/1112+18934665..18936079hAT family dimerisation domain containing protein
LOC_Os12g31540OsAffx.31963.1.S1_at11/1112+18938881..18941966expressed protein
LOC_Os12g31550OsAffx.19916.1.S1_at8/1112+18943639..18949263hypothetical protein
LOC_Os12g31560OsAffx.19917.1.S1_at11/1112+18956069..18958083Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19915.1.S1_at--878--9051Chr12:18935995..18936019 (25 bp)
TGCATCTACCATACTATCAACCTGA
LOC_Os12g31530
OsAffx.19915.1.S1_at--1108--2611NONE
AACCTGATTGTGCAAGCAGAACATG
NONE
OsAffx.19915.1.S1_at--142--5491Chr12:18935024..18935048 (25 bp)
GAACATGATCAAACACTTGATGGTG
LOC_Os12g31530
OsAffx.19915.1.S1_at--914--2991Chr12:18934997..18935021 (25 bp)
AATGTTGATCTCCTTGAGTGGTGGA
LOC_Os12g31530
OsAffx.19915.1.S1_at--965--2571Chr12:18934963..18934987 (25 bp)
AACGGACTCTTTGTGTGCAAGCTCA
LOC_Os12g31530
OsAffx.19915.1.S1_at--325--7351Chr12:18934949..18934973 (25 bp)
GTGCAAGCTCAGTTTGAACGAGACA
LOC_Os12g31530
OsAffx.19915.1.S1_at--84--171Chr12:18934925..18934949 (25 bp)
ATTATATTGGTTCTAGCGTCTGCTA
LOC_Os12g31530
OsAffx.19915.1.S1_at--920--1631Chr12:18934911..18934935 (25 bp)
AGCGTCTGCTATGTCTTCGGAGCAT
LOC_Os12g31530
OsAffx.19915.1.S1_at--1115--5791Chr12:18934793..18934817 (25 bp)
GACGCAGATGTGATCTATTGCCTTA
LOC_Os12g31530
OsAffx.19915.1.S1_at--80--851Chr12:18934760..18934784 (25 bp)
ATGGACGCAGATGCGAGGACGCAAC
LOC_Os12g31530
OsAffx.19915.1.S1_at--340--5051Chr12:18934706..18934730 (25 bp)
GCAGCAGCAGATGCGTTGACGGAAT
LOC_Os12g31530
Target Sequence 
TGCATCTACCATACTATCAACCTGATTGTGCAAGCAGAACATGATCAAACACTTGATGGTGAAAATGTTGATCTCCTTGA
GTGGTGGAAAGAGAAAGAACGGACTCTTTGTGTGCAAGCTCAGTTTGAACGAGACATTATATTGGTTCTAGCGTCTGCTA
TGTCTTCGGAGCATGCATTTAGTGAGGTTGGAAGAATTATTGATGAACAGAGGTCATGCGTTGCACCTGAGACAGTTGAG
GCAATCTATTGCCTTAAAGACTGGATGGACGCAGATGTGATCTATTGCCTTAAAGACTGGATGGACGCAGATGCGAGGAC
GCAACACCGGCTAGAGGATACAGAGATTGCCGATGCAGCAGCAGATGCGTTGACGGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis