Browse Element(s) Details


OsAffx.19931.1.S1_at

Description tigr:9640.m03140
TID=OsAffx.19931.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3233011/11peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os02g218401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32280OsAffx.7765.1.S1_at4/1112+19463053..19464159SWIB/MDM2 domain containing protein, expressed
LOC_Os12g32290OsAffx.31976.1.S1_at11/1112+19466662..19467473expressed protein
LOC_Os12g32290OsAffx.31976.1.S1_s_at11/1112+19466662..19467473expressed protein
LOC_Os12g32300OsAffx.31977.1.S1_at11/1112+19472219..19472560hypothetical protein
LOC_Os12g32310OsAffx.7766.1.S1_at10/1112+19473878..19475306hypothetical protein
LOC_Os12g32320NANA12+19476984..19482240expressed protein
LOC_Os12g32330OsAffx.19931.1.S1_at11/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32330OsAffx.12972.1.S1_at1/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32330OsAffx.10482.1.S1_x_at1/1112+19484781..19490116peroxisomal membrane protein 22 kDa, putative, expressed
LOC_Os12g32360Os.11899.1.S1_at11/1112+19490208..19492581expressed protein
LOC_Os12g32370OsAffx.10645.1.S1_at3/1112+19499530..19499847hypothetical protein
LOC_Os12g32380Os.10442.1.S1_at11/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32380OsAffx.31979.1.S1_at8/1112+19508196..1951260340S ribosomal protein S29, putative, expressed
LOC_Os12g32380Os.9437.1.S1_at3/1112+19508196..1951260340S ribosomal protein S29, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005778cellular_componentperoxisomal membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19931.1.S1_at--247--4451Chr12:19484970..19484994 (25 bp)
GCCTTCGTGCAGACCGCGGGCAGGA
LOC_Os12g32330
OsAffx.19931.1.S1_at--622--8592Chr12:19485040..19485064 (25 bp)
TGGTCGCGTGGTACCTCGGCTCGAT
LOC_Os12g32330
OsAffx.19931.1.S1_at--583--7311Chr12:19485078..19485102 (25 bp)
GTGCTGACCAAGAGCGTCACCGCCG
LOC_Os12g32330
OsAffx.19931.1.S1_at--853--9311Chr12:19485575..19485595 (21 bp)
TCCCAGATTCACACTAGCCATGTAT
LOC_Os12g32330
OsAffx.19931.1.S1_at--495--131Chr12:19485577..19485601 (25 bp)
ATTCACACTAGCCATGTATCTGCCA
LOC_Os12g32330
OsAffx.19931.1.S1_at--921--3511Chr12:19485589..19485613 (25 bp)
CATGTATCTGCCAGCCTGATATTGG
LOC_Os12g32330
OsAffx.19931.1.S1_at--250--6911Chr12:19485592..19485616 (25 bp)
GTATCTGCCAGCCTGATATTGGCTG
LOC_Os12g32330
OsAffx.19931.1.S1_at--795--9491Chr12:19485595..19485619 (25 bp)
TCTGCCAGCCTGATATTGGCTGGTA
LOC_Os12g32330
OsAffx.19931.1.S1_at--821--4271Chr12:19485603..19485627 (25 bp)
CCTGATATTGGCTGGTAAAGTTTGC
LOC_Os12g32330
OsAffx.19931.1.S1_at--848--6511Chr12:19485606..19485630 (25 bp)
GATATTGGCTGGTAAAGTTTGCAGT
LOC_Os12g32330
OsAffx.19931.1.S1_at--134--3891Chr12:19485614..19485638 (25 bp)
CTGGTAAAGTTTGCAGTGGGAATTA
LOC_Os12g32330
Target Sequence 
GCCTTCGTGCAGACCGCGGGCAGGAGGAGCGGGGGCGGGGCCGGGGCCGGGGCCGCCGTCGGGTCCGGGGTGGTCGCGTG
GTACCTCGGCTCGATCGAGGCGCGGCCCGTGCTGACCAAGAGCGTCACCGCCGCCGCCATCTTCACCGTCGCCGACCTCT
CCTCCCAGATTCACACTAGCCATGTATCTGCCAGCCTGATATTGGCTGGTAAAGTTTGCAGTGGGAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19931.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis