Browse Element(s) Details


OsAffx.19978.1.S1_x_at

Description tigr:9640.m03434
TID=OsAffx.19978.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3551011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35470OsAffx.21743.1.S1_s_at11/1112+21538011..21539415expressed protein
LOC_Os12g35480Os.49115.1.S1_at11/1112+21540718..21543285expressed protein
LOC_Os12g35490OsAffx.7800.1.S1_at11/1112+21544805..21547341hypothetical protein
LOC_Os12g35510OsAffx.19978.1.S1_x_at11/1112+21563962..21564348hypothetical protein
LOC_Os12g35520OsAffx.32036.1.S1_at9/1112+21566128..21566902hypothetical protein
LOC_Os12g35530OsAffx.32037.1.S1_at11/1112+21569403..21569621hypothetical protein
LOC_Os12g35540OsAffx.32038.1.S1_at11/1112+21575356..21580060hypothetical protein
LOC_Os12g35540OsAffx.32038.2.S1_at2/1112+21575356..21580060hypothetical protein
LOC_Os12g35550Os.55391.1.S1_at11/1112+21581383..21583899expressed protein
LOC_Os12g35560Os.6082.1.S1_at10/1112+21586064..21591497Kelch motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19978.1.S1_x_at--613--571Chr12:21564217..21564241 (25 bp)
ATGCCAAAGGAGGAGACAGCCACGT
LOC_Os12g35510
OsAffx.19978.1.S1_x_at--1148--2292Chr07:24498255..24498282 (25 bp)
AAAGGAGGAGACAGCCACGTCGACC
NONE
OsAffx.19978.1.S1_x_at--7--10691Chr12:21564136..21564160 (25 bp)
TTGCCGGCGAGGATGTACCTCCGGT
LOC_Os12g35510
OsAffx.19978.1.S1_x_at--343--6171Chr12:21564128..21564152 (25 bp)
GAGGATGTACCTCCGGTGGTCTCCA
LOC_Os12g35510
OsAffx.19978.1.S1_x_at--1038--731Chr12:21564124..21564148 (25 bp)
ATGTACCTCCGGTGGTCTCCACGCG
LOC_Os12g35510
OsAffx.19978.1.S1_x_at--368--9951Chr12:21564121..21564145 (25 bp)
TACCTCCGGTGGTCTCCACGCGGAA
LOC_Os12g35510
OsAffx.19978.1.S1_x_at--161--7811Chr12:21564111..21564135 (25 bp)
GGTCTCCACGCGGAACGGAAGCGAC
LOC_Os12g35510
OsAffx.19978.1.S1_x_at--638--7171Chr12:21564110..21564134 (25 bp)
GTCTCCACGCGGAACGGAAGCGACG
LOC_Os12g35510
OsAffx.19978.1.S1_x_at--732--9491Chr12:21564109..21564133 (25 bp)
TCTCCACGCGGAACGGAAGCGACGC
LOC_Os12g35510
OsAffx.19978.1.S1_x_at--186--7951Chr12:21564075..21564099 (25 bp)
GGATACACCTGCGAGGGCGAGGGCG
LOC_Os12g35510
OsAffx.19978.1.S1_x_at--1025--4231Chr12:21564038..21564062 (25 bp)
CCGGACGGCGCATAGGCGAGGAGGG
LOC_Os12g35510
Target Sequence 
ATGCCAAAGGAGGAGACAGCCACGTCGACCGGCGCTCTGGCGCGGCGACTGGAGGCGGTGGAGTCGCGGCAACGCCACTG
TTTGCCGGCGAGGATGTACCTCCGGTGGTCTCCACGCGGAACGGAAGCGACGCCGGGGAAGAGGATACACCTGCGAGGGC
GAGGGCGGTGACGACGCGGCCGGACGGCGCATAGGCGAGGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19978.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis