Browse Element(s) Details


OsAffx.19991.1.S1_at

Description tigr:9640.m03552
TID=OsAffx.19991.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF488694 putative transporter NIC3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3666011/11MATE efflux family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36620OsAffx.19989.1.S1_at10/1112+22386197..22393624pentatricopeptide, putative, expressed
LOC_Os12g36630Os.25124.1.A1_at5/1112+22394625..22395537fiber protein Fb19, putative, expressed
LOC_Os12g36630Os.8668.1.S1_x_at1/1112+22394625..22395537fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.8668.1.S1_x_at11/1112+22395790..22398230fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.8668.1.S1_at10/1112+22395790..22398230fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.47732.1.S1_s_at10/1112+22395790..22398230fiber protein Fb19, putative, expressed
LOC_Os12g36660OsAffx.19991.1.S1_at11/1112+22414216..22415713MATE efflux family protein
LOC_Os12g36670Os.49486.1.S1_at11/1112+22424316..22428387Leucine Rich Repeat family protein, expressed
LOC_Os12g36680Os.27640.1.A1_s_at11/1112+22432801..22435714expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015297molecular_functionantiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19991.1.S1_at--788--7851Chr12:22414973..22414997 (25 bp)
GGTATGAGCTCATGACGATCGCCGC
LOC_Os12g36660
OsAffx.19991.1.S1_at--657--571Chr12:22415047..22415071 (25 bp)
ATCCAGACCACGTCGTTGTTATACA
LOC_Os12g36660
OsAffx.19991.1.S1_at--72--10811Chr12:22415062..22415086 (25 bp)
TTGTTATACACAATTCCGGTCACCC
LOC_Os12g36660
OsAffx.19991.1.S1_at--326--10331Chr12:22415099..22415123 (25 bp)
TTTCAACCCGAGTCGCGAATGAGCT
LOC_Os12g36660
OsAffx.19991.1.S1_at--374--8411Chr12:22415145..22415169 (25 bp)
GGCCCAAGTCTCATTCGTAGTAGCA
LOC_Os12g36660
OsAffx.19991.1.S1_at--491--3491Chr12:22415207..22415231 (25 bp)
CATGGACTACATTTGGGCGAGGACT
LOC_Os12g36660
OsAffx.19991.1.S1_at--1142--791Chr12:22415232..22415256 (25 bp)
ATGGGTCCAAGTGTTCACCACTGAC
LOC_Os12g36660
OsAffx.19991.1.S1_at--940--2451Chr12:22415277..22415301 (25 bp)
AACAAGCGTGCTACCGGTTATCGGA
LOC_Os12g36660
OsAffx.19991.1.S1_at--25--791Chr12:22415304..22415328 (25 bp)
ATGTGAGCTTGCCAATTGTCCGCAG
LOC_Os12g36660
OsAffx.19991.1.S1_at--38--2211Chr12:22415329..22415353 (25 bp)
ACAACCGGTTGTGGAGTGCTACGCG
LOC_Os12g36660
OsAffx.19991.1.S1_at--459--3711Chr12:22415425..22415449 (25 bp)
CTAGTGCTTGCTTTTGGGCTTGATA
LOC_Os12g36660
Target Sequence 
GGTATGAGCTCATGACGATCGCCGCCGGCTATCTCCGGGACCCGCACACCGCATTGGCGACGGCGGCCATCGTCATCCAG
ACCACGTCGTTGTTATACACAATTCCGGTCACCCTAAGTTCAGCCGTTTCAACCCGAGTCGCGAATGAGCTAGGGGCGGG
CCGACCGAGATCGGCCCAAGTCTCATTCGTAGTAGCAATGGGAATTGCGATGATGGGCTCGTGCGTAGGGCTGACATGGA
CTACATTTGGGCGAGGACTATGGGTCCAAGTGTTCACCACTGACCCCACAATACAGTCACTCACAACAAGCGTGCTACCG
GTTATCGGATTATGTGAGCTTGCCAATTGTCCGCAGACAACCGGTTGTGGAGTGCTACGCGGCAGTGCGAGGCCGGCTGT
CGGGGCGGCCATCAACCTATACTCCTTCTACCTCGTCGGAGCACCTGTAGCCCTAGTGCTTGCTTTTGGGCTTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis