Browse Element(s) Details


Os.47732.1.S1_s_at

Description gb:BI809490
DB_XREF= gi:15856678
DB_XREF=F010F08
CLONE=F010F08
TID=Os.47732.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.47732 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_566108.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3664010/11fiber protein Fb19, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36590OsAffx.9020.1.S1_at1/1112+22370256..22378125retrotransposon protein, putative, unclassified, expressed
LOC_Os12g36590OsAffx.10218.1.S1_at1/1112+22370256..22378125retrotransposon protein, putative, unclassified, expressed
LOC_Os12g36600NANA12+22380902..22382055retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36610Os.54650.1.S1_at9/1112+22383662..22385702Patatin-like phospholipase family protein, expressed
LOC_Os12g36610OsAffx.32056.4.S1_x_at2/1112+22383662..22385702Patatin-like phospholipase family protein, expressed
LOC_Os12g36610OsAffx.32056.3.S1_x_at1/1112+22383662..22385702Patatin-like phospholipase family protein, expressed
LOC_Os12g36620OsAffx.19989.1.S1_at10/1112+22386197..22393624pentatricopeptide, putative, expressed
LOC_Os12g36630Os.25124.1.A1_at5/1112+22394625..22395537fiber protein Fb19, putative, expressed
LOC_Os12g36630Os.8668.1.S1_x_at1/1112+22394625..22395537fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.8668.1.S1_x_at11/1112+22395790..22398230fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.8668.1.S1_at10/1112+22395790..22398230fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.47732.1.S1_s_at10/1112+22395790..22398230fiber protein Fb19, putative, expressed
LOC_Os12g36660OsAffx.19991.1.S1_at11/1112+22414216..22415713MATE efflux family protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47732.1.S1_s_at--409--7511Chr12:22397839..22397863 (25 bp)
GTGGAGGCGGACCTGAAGAAGAGCT
LOC_Os12g36640
Os.47732.1.S1_s_at--102--2751Chr12:22397824..22397848 (25 bp)
AAGAAGAGCTCCATGCGCGTCATCG
LOC_Os12g36640
Os.47732.1.S1_s_at--271--5371Chr12:22397822..22397846 (25 bp)
GAAGAGCTCCATGCGCGTCATCGAG
LOC_Os12g36640
Os.47732.1.S1_s_at--110--9171NONE
TGCGCCCAGGTGAGTGATGCTCTGT
NONE
Os.47732.1.S1_s_at--669--4551Chr12:22397153..22397174 (22 bp)
GCCCAGGTGAGTGATGCTCTGTTTG
LOC_Os12g36640
Os.47732.1.S1_s_at--419--4691Chr12:22397072..22397096 (25 bp)
GCGGAGATGTTGGTTGTCGGAAGCC
LOC_Os12g36640
Os.47732.1.S1_s_at--541--7191Chr12:22397057..22397081 (25 bp)
GTCGGAAGCCATGGCTATGGAGCAA
LOC_Os12g36640
Os.47732.1.S1_s_at--91--8191Chr12:22397054..22397078 (25 bp)
GGAAGCCATGGCTATGGAGCAATTA
LOC_Os12g36640
Os.47732.1.S1_s_at--89--8191Chr12:22396219..22396243 (25 bp)
GGAAGCGTGAGTGACTACTGTTCTC
LOC_Os12g36640
Os.47732.1.S1_s_at--810--6111Chr12:22396211..22396235 (25 bp)
GAGTGACTACTGTTCTCATCATGCG
LOC_Os12g36640
Os.47732.1.S1_s_at--555--7371Chr12:22396209..22396233 (25 bp)
GTGACTACTGTTCTCATCATGCGCA
LOC_Os12g36640
Target Sequence 
GTGGAGGCGGACCTGAAGAAGAGCTCCATGCGCGTCATCGAGAAGNCCAGGGAGCTTTGCGCCCAGGTGAGTGATGCTCT
GTTTGAAGTGTTGGAAGGGGATGCCAGGAATGTTCTTTGTGAGNCNGTTGAGAGGCATCAGGCGGAGATGTTGGTTGTCG
GAAGCCATGGCTATGGAGCAATTANACGAGCTGTTCTNGGAAGCGTGAGTGACTACTGTTCTCATCATGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47732.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis