Browse Element(s) Details


Os.54650.1.S1_at

Description gb:AK106375.1
DB_XREF= gi:32991584
TID=Os.54650.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54650 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-D02, full insert sequence.
FL= gb:AK106375.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g366109/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36570OsAffx.24889.1.S1_at1/1112+22356275..22358960retrotransposon protein, putative, unclassified
LOC_Os12g36570Os.10728.1.S1_at1/1112+22356275..22358960retrotransposon protein, putative, unclassified
LOC_Os12g36570Os.37083.2.S1_at1/1112+22356275..22358960retrotransposon protein, putative, unclassified
LOC_Os12g36580Os.50833.1.S1_at2/1112+22359743..22365490transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g36580OsAffx.11394.1.S1_at2/1112+22359743..22365490transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g36590OsAffx.9020.1.S1_at1/1112+22370256..22378125retrotransposon protein, putative, unclassified, expressed
LOC_Os12g36590OsAffx.10218.1.S1_at1/1112+22370256..22378125retrotransposon protein, putative, unclassified, expressed
LOC_Os12g36600NANA12+22380902..22382055retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36610Os.54650.1.S1_at9/1112+22383662..22385702Patatin-like phospholipase family protein, expressed
LOC_Os12g36610OsAffx.32056.4.S1_x_at2/1112+22383662..22385702Patatin-like phospholipase family protein, expressed
LOC_Os12g36610OsAffx.32056.3.S1_x_at1/1112+22383662..22385702Patatin-like phospholipase family protein, expressed
LOC_Os12g36620OsAffx.19989.1.S1_at10/1112+22386197..22393624pentatricopeptide, putative, expressed
LOC_Os12g36630Os.25124.1.A1_at5/1112+22394625..22395537fiber protein Fb19, putative, expressed
LOC_Os12g36630Os.8668.1.S1_x_at1/1112+22394625..22395537fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.8668.1.S1_x_at11/1112+22395790..22398230fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.8668.1.S1_at10/1112+22395790..22398230fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.47732.1.S1_s_at10/1112+22395790..22398230fiber protein Fb19, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54650.1.S1_at--763--9331Chr12:22385446..22385470 (25 bp)
TCGCCGGGAATCTCTCCGAGGAGAG
LOC_Os12g36610
Os.54650.1.S1_at--979--6451Chr12:22385480..22385504 (25 bp)
GATCAAGCGGCGGAACACTGTGCAG
LOC_Os12g36610
Os.54650.1.S1_at--532--5491Chr12:22385492..22385516 (25 bp)
GAACACTGTGCAGGCTGGTGTGACT
LOC_Os12g36610
Os.54650.1.S1_at--311--971Chr12:22385524..22385548 (25 bp)
AGGAGTAGTCATGAAATCCCATCAT
LOC_Os12g36610
Os.54650.1.S1_at--277--8971Chr12:22385535..22385559 (25 bp)
TGAAATCCCATCATGTCCCATTGCT
LOC_Os12g36610
Os.54650.1.S1_at--1146--3591NONE
CATTGCTCCACGTCTACTGTATTTC
NONE
Os.54650.1.S1_at--1037--3291NONE
CACGTCTACTGTATTTCCGGGCGGG
NONE
Os.54650.1.S1_at--654--7551Chr12:22385585..22385609 (25 bp)
GGGCCATTCCGAATTTCCGGTCGAT
LOC_Os12g36610
Os.54650.1.S1_at--617--4251Chr12:22385601..22385625 (25 bp)
CCGGTCGATCATCTCAAAATGTTTT
LOC_Os12g36610
Os.54650.1.S1_at--441--5531Chr12:22385633..22385657 (25 bp)
GAAAAATTCGGTATATGCTGTTAAA
LOC_Os12g36610
Os.54650.1.S1_at--734--3071Chr12:22385678..22385702 (25 bp)
AATAATACCAGCTCCGTTTTATATT
LOC_Os12g36610
Target Sequence 
TCGCCGGGAATCTCTCCGAGGAGAGGACGGCGAGGATCAAGCGGCGGAACACTGTGCAGGCTGGTGTGACTGGGTTTTAG
GAGTAGTCATGAAATCCCATCATGTCCCATTGCTCCACGTCTACTGTATTTCCGGGCGGGGGCCATTCCGAATTTCCGGT
CGATCATCTCAAAATGTTTTTTCGGTTGAAAAATTCGGTATATGCTGTTAAAAAGTTTAAATAAGGTAAATAAATAATAC
CAGCTCCGTTTTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54650.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis