Browse Element(s) Details


OsAffx.19989.1.S1_at

Description tigr:9640.m03548
TID=OsAffx.19989.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161537 putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3662010/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36580Os.50833.1.S1_at2/1112+22359743..22365490transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g36580OsAffx.11394.1.S1_at2/1112+22359743..22365490transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g36590OsAffx.9020.1.S1_at1/1112+22370256..22378125retrotransposon protein, putative, unclassified, expressed
LOC_Os12g36590OsAffx.10218.1.S1_at1/1112+22370256..22378125retrotransposon protein, putative, unclassified, expressed
LOC_Os12g36600NANA12+22380902..22382055retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36610Os.54650.1.S1_at9/1112+22383662..22385702Patatin-like phospholipase family protein, expressed
LOC_Os12g36610OsAffx.32056.4.S1_x_at2/1112+22383662..22385702Patatin-like phospholipase family protein, expressed
LOC_Os12g36610OsAffx.32056.3.S1_x_at1/1112+22383662..22385702Patatin-like phospholipase family protein, expressed
LOC_Os12g36620OsAffx.19989.1.S1_at10/1112+22386197..22393624pentatricopeptide, putative, expressed
LOC_Os12g36630Os.25124.1.A1_at5/1112+22394625..22395537fiber protein Fb19, putative, expressed
LOC_Os12g36630Os.8668.1.S1_x_at1/1112+22394625..22395537fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.8668.1.S1_x_at11/1112+22395790..22398230fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.8668.1.S1_at10/1112+22395790..22398230fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.47732.1.S1_s_at10/1112+22395790..22398230fiber protein Fb19, putative, expressed
LOC_Os12g36660OsAffx.19991.1.S1_at11/1112+22414216..22415713MATE efflux family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19989.1.S1_at--43--10071NONE
TAGTCGGGAGTATGTCGGCTGCCAC
NONE
OsAffx.19989.1.S1_at--778--8911Chr12:22387837..22387861 (25 bp)
TGAGCCCCAGATCAAGCCCGTATGA
LOC_Os12g36620
OsAffx.19989.1.S1_at--982--4531Chr12:22387822..22387846 (25 bp)
GCCCGTATGACAGGGAGATCCATCT
LOC_Os12g36620
OsAffx.19989.1.S1_at--742--1171Chr12:22387738..22387762 (25 bp)
AGTACTCTGGGATGGAGACCTACGA
LOC_Os12g36620
OsAffx.19989.1.S1_at--1028--1371Chr12:22387723..22387747 (25 bp)
AGACCTACGAGCGAGACTGGCGACC
LOC_Os12g36620
OsAffx.19989.1.S1_at--1082--8151Chr12:22387338..22387362 (25 bp)
GGAAACGACAGCTCCATCAGAGAGT
LOC_Os12g36620
OsAffx.19989.1.S1_at--913--631Chr12:22387234..22387256 (23 bp)
ATGAAGTATTCTTACCGCTCCATAC
LOC_Os12g36620
OsAffx.19989.1.S1_at--171--2011Chr12:22387211..22387235 (25 bp)
ACTCGTTTATGTGCTTCTTCTTTAT
LOC_Os12g36620
OsAffx.19989.1.S1_at--815--3131Chr12:22387145..22387166 (22 bp)
AATTATCCACGGCATGCAACAGTCG
LOC_Os12g36620
OsAffx.19989.1.S1_at--568--3271Chr12:22386715..22386736 (22 bp)
CAACAGTCGTGCAGAGATCCAGAAA
LOC_Os12g36620
OsAffx.19989.1.S1_at--268--2611Chr12:22386639..22386663 (25 bp)
AACCTGTCGGGAATTATGCTTCGCT
LOC_Os12g36620
Target Sequence 
TAGTCGGGAGTATGTCGGCTGCCACGCGATCCGCTGCTGGGCTACCTGGAGGAAGGAAACCAGGACGCTGAGCCCCAGAT
CAAGCCCGTATGACAGGGAGATCCATCTGGAGGAGCTGCCACCACGAGGGCTGCAGTGCATAGCTTCCCTTCTTGTCACC
TTCCAGGAGTACTCTGGGATGGAGACCTACGAGCGAGACTGGCGACCAGGGTTAAACTTTCGGTTTAGCCGATTTGATCG
TTCTGATGGAAACGACAGCTCCATCAGAGAGTTGACAGGGCAAATGCTGCAGGATATGAAGTATTCTTACCGCTCCATAC
TCGTTTATGTGCTTCTTCTTTATGACAAAACCAACGATGATCAACTTCTCAAGCATCTGAAGCGAGAAATTATCCACGGC
ATGCAACAGTCGTGCAGAGATCCAGAAATGGGTCGTGAGATGGATGAGGTTGCTGCTATGTTTTGTTCAAAGCAAGGGAA
ACCTGTCGGGAATTATGCTTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis