Browse Element(s) Details


OsAffx.9020.1.S1_at

Description gb:NM_193313.1
DB_XREF= gi:34913709
GEN=OSJNBa0062A24.26
TID=OsAffx.9020.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0062A24.26 (OSJNBa0062A24.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g365901/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36550NANA12+22346031..22351480retrotransposon protein, putative, unclassified
LOC_Os12g36560Os.28943.1.S1_x_at2/1112+22352121..22355346retrotransposon protein, putative, unclassified
LOC_Os12g36570OsAffx.24889.1.S1_at1/1112+22356275..22358960retrotransposon protein, putative, unclassified
LOC_Os12g36570Os.10728.1.S1_at1/1112+22356275..22358960retrotransposon protein, putative, unclassified
LOC_Os12g36570Os.37083.2.S1_at1/1112+22356275..22358960retrotransposon protein, putative, unclassified
LOC_Os12g36580Os.50833.1.S1_at2/1112+22359743..22365490transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g36580OsAffx.11394.1.S1_at2/1112+22359743..22365490transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g36590OsAffx.9020.1.S1_at1/1112+22370256..22378125retrotransposon protein, putative, unclassified, expressed
LOC_Os12g36590OsAffx.10218.1.S1_at1/1112+22370256..22378125retrotransposon protein, putative, unclassified, expressed
LOC_Os12g36600NANA12+22380902..22382055retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36610Os.54650.1.S1_at9/1112+22383662..22385702Patatin-like phospholipase family protein, expressed
LOC_Os12g36610OsAffx.32056.4.S1_x_at2/1112+22383662..22385702Patatin-like phospholipase family protein, expressed
LOC_Os12g36610OsAffx.32056.3.S1_x_at1/1112+22383662..22385702Patatin-like phospholipase family protein, expressed
LOC_Os12g36620OsAffx.19989.1.S1_at10/1112+22386197..22393624pentatricopeptide, putative, expressed
LOC_Os12g36630Os.25124.1.A1_at5/1112+22394625..22395537fiber protein Fb19, putative, expressed
LOC_Os12g36630Os.8668.1.S1_x_at1/1112+22394625..22395537fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.8668.1.S1_x_at11/1112+22395790..22398230fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.8668.1.S1_at10/1112+22395790..22398230fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.47732.1.S1_s_at10/1112+22395790..22398230fiber protein Fb19, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9020.1.S1_at--1019--391Chr01:20373894..20373918 (25 bp)
ATCAGTTTTGCTTTGTTCATAAGAG
NONE
OsAffx.9020.1.S1_at--1051--4872Chr12:22377430..22377899 (25 bp)
GCTTTGTTCATAAGAGCACCTGCAA
LOC_Os12g36590
OsAffx.9020.1.S1_at--45--2451Chr01:20371937..20371958 (22 bp)
AAAATGCTGGGTGTATGTGGAGAAA
NONE
OsAffx.9020.1.S1_at--246--8651Chr01:20371922..20371946 (25 bp)
TGTGGAGAAAACACTCTGCAAACAG
NONE
OsAffx.9020.1.S1_at--534--2471Chr01:20371913..20371937 (25 bp)
AACACTCTGCAAACAGCCACATGTT
NONE
OsAffx.9020.1.S1_at--582--5131Chr01:20371905..20371929 (25 bp)
GCAAACAGCCACATGTTACCGAGTT
NONE
OsAffx.9020.1.S1_at--126--6691Chr01:20371891..20371915 (25 bp)
GTTACCGAGTTTCTCAAAGCACTAG
NONE
OsAffx.9020.1.S1_at--443--10571Chr01:20371881..20371905 (25 bp)
TTCTCAAAGCACTAGGTAACATCCT
NONE
OsAffx.9020.1.S1_at--488--5111Chr01:20371873..20371897 (25 bp)
GCACTAGGTAACATCCTAACCATGC
NONE
OsAffx.9020.1.S1_at--69--9811Chr01:20371857..20371881 (25 bp)
TAACCATGCCGTTCCACAGATTGGG
NONE
OsAffx.9020.1.S1_at--80--4511Chr01:20371850..20371874 (25 bp)
GCCGTTCCACAGATTGGGACGGCAA
NONE
Target Sequence 
ATCAGTTTTGCTTTGTTCATAAGAGCACCTGCAATGGTAAAATGCTGGGTGTATGTGGAGAAAACACTCTGCAAACAGCC
ACATGTTACCGAGTTTCTCAAAGCACTAGGTAACATCCTAACCATGCCGTTCCACAGATTGGGACGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9020.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis