Browse Element(s) Details


Os.8668.1.S1_at

Description gb:AK066459.1
DB_XREF= gi:32976477
TID=Os.8668.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8668 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013066N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066N15, full insert sequence.
FL= gb:AK066459.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3664010/11fiber protein Fb19, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36590OsAffx.9020.1.S1_at1/1112+22370256..22378125retrotransposon protein, putative, unclassified, expressed
LOC_Os12g36590OsAffx.10218.1.S1_at1/1112+22370256..22378125retrotransposon protein, putative, unclassified, expressed
LOC_Os12g36600NANA12+22380902..22382055retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g36610Os.54650.1.S1_at9/1112+22383662..22385702Patatin-like phospholipase family protein, expressed
LOC_Os12g36610OsAffx.32056.4.S1_x_at2/1112+22383662..22385702Patatin-like phospholipase family protein, expressed
LOC_Os12g36610OsAffx.32056.3.S1_x_at1/1112+22383662..22385702Patatin-like phospholipase family protein, expressed
LOC_Os12g36620OsAffx.19989.1.S1_at10/1112+22386197..22393624pentatricopeptide, putative, expressed
LOC_Os12g36630Os.25124.1.A1_at5/1112+22394625..22395537fiber protein Fb19, putative, expressed
LOC_Os12g36630Os.8668.1.S1_x_at1/1112+22394625..22395537fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.8668.1.S1_x_at11/1112+22395790..22398230fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.8668.1.S1_at10/1112+22395790..22398230fiber protein Fb19, putative, expressed
LOC_Os12g36640Os.47732.1.S1_s_at10/1112+22395790..22398230fiber protein Fb19, putative, expressed
LOC_Os12g36660OsAffx.19991.1.S1_at11/1112+22414216..22415713MATE efflux family protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8668.1.S1_at--278--3831Chr12:22396184..22396208 (25 bp)
CTGCACCGTGATGATAGTAAAAAAG
LOC_Os12g36640
Os.8668.1.S1_at--164--5111Chr12:22396148..22396172 (25 bp)
GCACTGAGTCCATGAGCGGCGGCCC
LOC_Os12g36640
Os.8668.1.S1_at--1149--8111Chr12:22396117..22396141 (25 bp)
GGACTGAACAGTATCATTCATGTAT
LOC_Os12g36640
Os.8668.1.S1_at--69--6891Chr12:22396096..22396120 (25 bp)
GTATATATCTACCACCAAATTGTGA
LOC_Os12g36640
Os.8668.1.S1_at--890--6851Chr12:22395938..22395962 (25 bp)
GTTTGATATCTTAAAACAGTGCGTG
LOC_Os12g36640
Os.8668.1.S1_at--367--5531Chr12:22395900..22395924 (25 bp)
GAAAAATATTTCATGTCTATTACAC
LOC_Os12g36640
Os.8668.1.S1_at--562--7151Chr12:22395886..22395910 (25 bp)
GTCTATTACACATATGCATCGTCAA
LOC_Os12g36640
Os.8668.1.S1_at--436--4971Chr12:22395871..22395895 (25 bp)
GCATCGTCAAGATATTGCAAGTTCT
LOC_Os12g36640
Os.8668.1.S1_at--661--10731Chr12:22395857..22395881 (25 bp)
TTGCAAGTTCTATTGATCTGGAATT
LOC_Os12g36640
Os.8668.1.S1_at--307--491Chr12:22395801..22395825 (25 bp)
ATCTGTGTATGTGATTCAACAAGTT
LOC_Os12g36640
Os.8668.1.S1_at--205--6551Chr12:22395789..22395813 (25 bp)
GATTCAACAAGTTGTTGACCAGGCA
NONE
Target Sequence 
CTGCACCGTGATGATAGTAAAAAAGCCGAAGCACAAGCACTGAGTCCATGAGCGGCGGCCCCAGCCTGGACTGAACAGTA
TCATTCATGTATATATCTACCACCAAATTGTGAACGTATCTGTGTGAATAAATTGTCATTGTATTGACACTTCTAGTCAG
CTTCAGCATGAAGGCATGNTACCATATAGCATGCACTGTATATCCTTCTACCTCTTGGATCCTGGATCGAGAAGGTAAAT
AATTTATGTTTGATATCTTAAAACAGTGCGTGNTTAATATTCATGCGAAAAATATTTCATGTCTATTACACATATGCATC
GTCAAGATATTGCAAGTTCTATTGATCTGGAATTGTGATTTTATTAGTGAGAAATATTTCACTTNATCTGTGTATGTGAT
TCAACAAGTTGTTGACCAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis