Browse Element(s) Details


OsAffx.20000.1.S1_at

Description tigr:9640.m03647
TID=OsAffx.20000.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=phosphoinositide-specific phospholipase C 8
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3756411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37530Os.8465.1.S1_a_at11/1112+22997410..23001992flagellar biosynthesis protein FLHA, putative, expressed
LOC_Os12g37540Os.2741.4.S1_x_at2/1112+23003155..23004784hypothetical protein
LOC_Os12g37550Os.18608.1.S1_at11/1112+23008967..23011524expressed protein
LOC_Os12g37560Os.8202.1.S1_at9/1112+23015182..23019780phospholipase C, putative, expressed
LOC_Os12g37564OsAffx.20000.1.S1_at11/1112+23020782..23022025hypothetical protein
LOC_Os12g37570Os.27404.1.A1_at11/1112+23027641..23034880protein kinase family protein, putative, expressed
LOC_Os12g37570Os.57425.1.S1_x_at9/1112+23027641..23034880protein kinase family protein, putative, expressed
LOC_Os12g37580Os.24641.1.A1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37580OsAffx.20001.1.S1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37590Os.53783.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37590Os.8542.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20000.1.S1_at--917--2351Chr12:23021217..23021241 (25 bp)
AAAGCTCCCGTATCACATGGTGGTG
LOC_Os12g37564
OsAffx.20000.1.S1_at--798--7491Chr12:23021236..23021260 (25 bp)
GTGGTGGTGCTCAAATCAATCCCGA
LOC_Os12g37564
OsAffx.20000.1.S1_at--909--211Chr12:23021277..23021301 (25 bp)
ATATTTCTTCTGTGAAACCTCCCAG
LOC_Os12g37564
OsAffx.20000.1.S1_at--47--1371Chr12:23021406..23021430 (25 bp)
AGAGCAGTCTCAGCATTCTGGCCTA
LOC_Os12g37564
OsAffx.20000.1.S1_at--631--8431Chr12:23021425..23021449 (25 bp)
GGCCTATTCATTTCCTGGTTTTGAG
LOC_Os12g37564
OsAffx.20000.1.S1_at--700--4411Chr12:23021538..23021590 (25 bp)
GCCAGATCTACTACACAGCAGTTAG
LOC_Os12g37564
OsAffx.20000.1.S1_at--865--7671Chr12:23021830..23021854 (25 bp)
GGGTTCACCTCAAATGATGACCTCA
LOC_Os12g37564
OsAffx.20000.1.S1_at--887--5031Chr12:23021884..23021908 (25 bp)
GCAGTTGACCTGGAAAGTTCTCTTT
LOC_Os12g37564
OsAffx.20000.1.S1_at--566--5631Chr12:23021914..23021938 (25 bp)
GACACATCTGTTACATTTTCTCCAT
LOC_Os12g37564
OsAffx.20000.1.S1_at--423--3271Chr12:23021946..23021970 (25 bp)
CAACAATTGCACTCCATCCTGATAT
LOC_Os12g37564
OsAffx.20000.1.S1_at--260--8831Chr12:23021965..23021989 (25 bp)
TGATATTTTGCAAGATCCCCGTCCC
LOC_Os12g37564
Target Sequence 
AAAGCTCCCGTATCACATGGTGGTGGTGCTCAAATCAATCCCGAGAGGTGATTTAGTGGAATATTTCTTCTGTGAAACCT
CCCAGCCTGTCACTAGGGAGAGCAGTCTCAGCATTCTGGCCTATTCATTTCCTGGTTTTGAGGATGTTAATGTTTGTTAT
CTGAAGCAACCTTTTCAGAAAATATTATACCATATTCAGCAAAATTTGGGAATAGAAACAATCAAGAAATGCCAGATCTA
CTACACAGCAGTTAGAGTTCTAAAGATTATCATGATGCCAGAAATGGGTTCACCTCAAATGATGACCTCAATTGTCAAAG
CTAGTATGACAATGAAGCAGCAGTTGACCTGGAAAGTTCTCTTTTTGGAGACACATCTGTTACATTTTCTCCATTTTAAG
GCAACAATTGCACTCCATCCTGATATTTTGCAAGATCCCCGTCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis