Browse Element(s) Details


OsAffx.20006.1.S1_at

Description tigr:9640.m03713
TID=OsAffx.20006.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Dof zinc finger protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3820011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38170Os.17108.1.S1_at11/1112+23401918..23403053Pathogenesis-related protein 5 precursor, putative, expressed
LOC_Os12g38180Os.50671.1.S1_x_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38180Os.38164.1.S2_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38180Os.38164.1.S1_at11/1112+23408631..23413654Heat shock cognate 70 kDa protein 2, putative, expressed
LOC_Os12g38190OsAffx.32079.1.S1_x_at11/1112+23418670..23420572hypothetical protein
LOC_Os12g38190OsAffx.16036.1.S1_x_at1/1112+23418670..23420572hypothetical protein
LOC_Os12g38200OsAffx.20006.1.S1_at11/1112+23425400..23426830Dof domain, zinc finger family protein, expressed
LOC_Os12g38210Os.6980.1.S1_at11/1112+23434652..23439842Spotted leaf protein 11, putative, expressed
LOC_Os12g38210OsAffx.8265.1.A1_at1/1112+23434652..23439842Spotted leaf protein 11, putative, expressed
LOC_Os12g38220NANA12+23449664..23449939hypothetical protein
LOC_Os12g38230Os.55662.1.S1_at11/1112+23451269..23452144expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20006.1.S1_at--268--3931Chr12:23426376..23426400 (25 bp)
CGGCCGACGTGATCGCCAGCATGCA
LOC_Os12g38200
OsAffx.20006.1.S1_at--1095--4151Chr12:23426541..23426565 (25 bp)
CGCCGCCGTTCTTGCAGCAAGGGCT
LOC_Os12g38200
OsAffx.20006.1.S1_at--232--1491Chr12:23426556..23426580 (25 bp)
AGCAAGGGCTGCACGGCTACCACTT
LOC_Os12g38200
OsAffx.20006.1.S1_at--387--4151Chr12:23426656..23426680 (25 bp)
CGCGCAGCTGGCGTCCGTCAAGATG
LOC_Os12g38200
OsAffx.20006.1.S1_at--1078--6171Chr12:23426681..23426705 (25 bp)
GAGGAGCACGGCACCAACAATGGCG
LOC_Os12g38200
OsAffx.20006.1.S1_at--134--5951Chr12:23426684..23426708 (25 bp)
GAGCACGGCACCAACAATGGCGGCG
LOC_Os12g38200
OsAffx.20006.1.S1_at--141--10631Chr12:23426723..23426747 (25 bp)
TTCGTCGGAGCGCACGAGCAGTACT
LOC_Os12g38200
OsAffx.20006.1.S1_at--852--9431Chr12:23426727..23426751 (25 bp)
TCGGAGCGCACGAGCAGTACTGGCA
LOC_Os12g38200
OsAffx.20006.1.S1_at--482--1651Chr12:23426731..23426755 (25 bp)
AGCGCACGAGCAGTACTGGCACGGC
LOC_Os12g38200
OsAffx.20006.1.S1_at--757--1511Chr12:23426739..23426763 (25 bp)
AGCAGTACTGGCACGGCGGCAATGG
LOC_Os12g38200
OsAffx.20006.1.S1_at--849--4471Chr12:23426776..23426800 (25 bp)
GCCGGCGGAGTTCTTGTCAGGGTTC
LOC_Os12g38200
Target Sequence 
CGGCCGACGTGATCGCCAGCATGCAGGCCGGCGGCGCGCTGCTGCCGCACCACCTGATCGGCGGCCTCCCGTCGTCCGCC
GCCGCCGCCGCGGCGCTGGAGGCGTCGCTGGAGGGGTACCACCACCACCACCACGCCCACGGCCACCAACTGCCGTTCCT
GCAGCCGCCGCCGTTCTTGCAGCAAGGGCTGCACGGCTACCACTTCGCCGACGGTGACGTCGCCGCCGGCGCCGCCCTGG
CCGACGGCGGGTTCCCGAGGGGCGTGGCGTCGGGCCTCCTCGCGCAGCTGGCGTCCGTCAAGATGGAGGAGCACGGCACC
AACAATGGCGGCGGCGTCGGCGGCGGCTTCGTCGGAGCGCACGAGCAGTACTGGCACGGCGGCAATGGCGGCGGCGGGTG
GCCGGCGGAGTTCTTGTCAGGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis