Browse Element(s) Details


OsAffx.20015.1.S1_at

Description tigr:9629.m03948
TID=OsAffx.20015.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3882010/11hypothetical protein
LOC_Os01g4130010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38790OsAffx.7832.1.S1_at10/1112+23798169..23800677Targeting protein for Xklp2 containing protein, expressed
LOC_Os12g38800Os.50914.1.S1_at11/1112+23808301..23811671RNA recognition motif family protein, expressed
LOC_Os12g38810Os.54620.1.A1_at11/1112+23817358..23818799expressed protein
LOC_Os12g38820OsAffx.20015.1.S1_at10/1112+23825019..23825937hypothetical protein
LOC_Os12g38820OsAffx.20015.1.S1_x_at9/1112+23825019..23825937hypothetical protein
LOC_Os12g38820Os.52861.1.S1_at4/1112+23825019..23825937hypothetical protein
LOC_Os12g38830NANA12+23827102..23827452hypothetical protein
LOC_Os12g38840Os.14491.2.S1_x_at1/1112+23830041..23832899transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g38850Os.52191.1.A1_at11/1112+23846311..23851430expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20015.1.S1_at--572--1731NONE
ACCTTCGCGGCGCTTATGGAATTAA
NONE
OsAffx.20015.1.S1_at--601--4398Chr10:5715941..5716007 (25 bp)
GCCAAATCAATGCACGCTATGATTT
NONE
OsAffx.20015.1.S1_at--552--373Chr05:21903423..21903447 (25 bp)
ATCAATGCACGCTATGATTTCGCAG
NONE
OsAffx.20015.1.S1_at--887--9733Chr05:21903424..21903448 (25 bp)
TCAATGCACGCTATGATTTCGCAGT
NONE
OsAffx.20015.1.S1_at--629--3194Chr05:21903425..21903449 (25 bp)
CAATGCACGCTATGATTTCGCAGTT
NONE
OsAffx.20015.1.S1_at--488--3014Chr05:21903426..21903450 (25 bp)
AATGCACGCTATGATTTCGCAGTTT
NONE
OsAffx.20015.1.S1_at--700--653Chr05:21903427..21903451 (25 bp)
ATGCACGCTATGATTTCGCAGTTTC
NONE
OsAffx.20015.1.S1_at--939--5093Chr05:21903429..21903453 (25 bp)
GCACGCTATGATTTCGCAGTTTCTG
NONE
OsAffx.20015.1.S1_at--613--3353Chr05:21903430..21903454 (25 bp)
CACGCTATGATTTCGCAGTTTCTGG
NONE
OsAffx.20015.1.S1_at--925--1833Chr05:21903431..21903455 (25 bp)
ACGCTATGATTTCGCAGTTTCTGGA
NONE
OsAffx.20015.1.S1_at--568--4873Chr05:21903433..21903457 (25 bp)
GCTATGATTTCGCAGTTTCTGGACC
NONE
Target Sequence 
ACCTTCGCGGCGCTTATGGAATTAANGCCAAATCAATGCACGCTATGATTTCGCAGTTTCTGGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20015.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis