Browse Element(s) Details


OsAffx.20042.1.S1_at

Description tigr:9640.m03906
TID=OsAffx.20042.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Kinesin motor domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3998011/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39930OsAffx.32108.1.S1_at11/1112+24648104..24648630hypothetical protein
LOC_Os12g39930OsAffx.32108.1.S1_x_at11/1112+24648104..24648630hypothetical protein
LOC_Os12g39930OsAffx.32339.1.S1_x_at2/1112+24648104..24648630hypothetical protein
LOC_Os12g39940NANA12+24650767..24652855retrotransposon protein, putative, unclassified
LOC_Os12g39950OsAffx.29757.4.S1_x_at11/1112+24654676..24659054hypothetical protein
LOC_Os12g39950OsAffx.29757.1.S1_x_at3/1112+24654676..24659054hypothetical protein
LOC_Os12g39950OsAffx.29757.3.S1_x_at1/1112+24654676..24659054hypothetical protein
LOC_Os12g39960OsAffx.7839.1.S1_at11/1112+24661943..24662535transposon protein, putative, unclassified
LOC_Os12g39970Os.14325.1.S1_at9/1112+24664170..24667227expressed protein
LOC_Os12g39980OsAffx.20042.1.S1_s_at11/1112+24669649..24685756Kinesin motor domain containing protein, expressed
LOC_Os12g39980OsAffx.20042.1.S1_at11/1112+24669649..24685756Kinesin motor domain containing protein, expressed
LOC_Os12g39990NANA12+24690244..24691041Dof domain, zinc finger family protein
LOC_Os12g40000OsAffx.20043.1.S1_at11/1112+24694200..24696598hypothetical protein
LOC_Os12g40010OsAffx.32110.1.S1_at11/1112+24709186..24712168expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20042.1.S1_at--752--10151Chr12:24669963..24669987 (25 bp)
TATCGGAGCTTCGGAGCGAGTCATC
LOC_Os12g39980
OsAffx.20042.1.S1_at--443--491Chr12:24669962..24669986 (25 bp)
ATCGGAGCTTCGGAGCGAGTCATCT
LOC_Os12g39980
OsAffx.20042.1.S1_at--968--9431Chr12:24669961..24669985 (25 bp)
TCGGAGCTTCGGAGCGAGTCATCTT
LOC_Os12g39980
OsAffx.20042.1.S1_at--1015--3951Chr12:24669960..24669984 (25 bp)
CGGAGCTTCGGAGCGAGTCATCTTC
LOC_Os12g39980
OsAffx.20042.1.S1_at--939--1631Chr12:24669949..24669973 (25 bp)
AGCGAGTCATCTTCTCTTAGCTCAG
LOC_Os12g39980
OsAffx.20042.1.S1_at--746--4611Chr12:24669948..24669972 (25 bp)
GCGAGTCATCTTCTCTTAGCTCAGG
LOC_Os12g39980
OsAffx.20042.1.S1_at--430--4071Chr12:24669947..24669971 (25 bp)
CGAGTCATCTTCTCTTAGCTCAGGT
LOC_Os12g39980
OsAffx.20042.1.S1_at--921--6091Chr12:24669946..24669970 (25 bp)
GAGTCATCTTCTCTTAGCTCAGGTC
LOC_Os12g39980
OsAffx.20042.1.S1_at--1006--1151Chr12:24669945..24669969 (25 bp)
AGTCATCTTCTCTTAGCTCAGGTCG
LOC_Os12g39980
OsAffx.20042.1.S1_at--337--7131Chr12:24669944..24669968 (25 bp)
GTCATCTTCTCTTAGCTCAGGTCGC
LOC_Os12g39980
OsAffx.20042.1.S1_at--433--9611Chr12:24669943..24669967 (25 bp)
TCATCTTCTCTTAGCTCAGGTCGCT
LOC_Os12g39980
Target Sequence 
TATCGGAGCTTCGGAGCGAGTCATCTTCTCTTAGCTCAGGTCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis