Browse Element(s) Details


OsAffx.32110.1.S1_at

Description tigr:9640.m03909
TID=OsAffx.32110.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Z99707 putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4001011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39980OsAffx.20042.1.S1_s_at11/1112+24669649..24685756Kinesin motor domain containing protein, expressed
LOC_Os12g39980OsAffx.20042.1.S1_at11/1112+24669649..24685756Kinesin motor domain containing protein, expressed
LOC_Os12g39990NANA12+24690244..24691041Dof domain, zinc finger family protein
LOC_Os12g40000OsAffx.20043.1.S1_at11/1112+24694200..24696598hypothetical protein
LOC_Os12g40010OsAffx.32110.1.S1_at11/1112+24709186..24712168expressed protein
LOC_Os12g40020NANA12+24713720..24714865retrotransposon protein, putative, unclassified
LOC_Os12g40030OsAffx.22947.1.S1_x_at5/1112+24716948..24721493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g40030OsAffx.22947.2.S1_x_at3/1112+24716948..24721493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g40030OsAffx.22947.5.S1_x_at2/1112+24716948..24721493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g40030OsAffx.22947.3.S1_x_at2/1112+24716948..24721493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g40040NANA12+24722526..24725257retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g40050Os.56292.1.S1_x_at2/1112+24727154..24732152retrotransposon protein, putative, unclassified
LOC_Os12g40050Os.56292.1.S1_at1/1112+24727154..24732152retrotransposon protein, putative, unclassified
LOC_Os12g40060Os.45957.4.S1_x_at1/1112+24734024..24738825retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32110.1.S1_at--991--7571Chr12:24711397..24711421 (25 bp)
GGGCTTAACAGAACTACTCTTAGAT
LOC_Os12g40010
OsAffx.32110.1.S1_at--881--8291Chr12:24711440..24711464 (25 bp)
GGCTAGTAACTTCACTGTTGCAGCT
LOC_Os12g40010
OsAffx.32110.1.S1_at--452--8811Chr12:24711455..24711479 (25 bp)
TGTTGCAGCTGAGGTTACCAGGCTC
LOC_Os12g40010
OsAffx.32110.1.S1_at--950--8271Chr12:24711625..24711649 (25 bp)
GGCATATCTCTTGGCATTGGTTTTC
LOC_Os12g40010
OsAffx.32110.1.S1_at--256--8291Chr12:24711637..24711661 (25 bp)
GGCATTGGTTTTCTCAGTCATATAA
LOC_Os12g40010
OsAffx.32110.1.S1_at--588--831Chr12:24711689..24711713 (25 bp)
ATGGAGCATTCGATATACCTGAGGC
LOC_Os12g40010
OsAffx.32110.1.S1_at--324--10191Chr12:24711702..24711726 (25 bp)
TATACCTGAGGCTTCCTTCTATAAG
LOC_Os12g40010
OsAffx.32110.1.S1_at--981--8991Chr12:24711765..24711789 (25 bp)
TGAAGTTGTGACTGCTTCCCTTGGC
LOC_Os12g40010
OsAffx.32110.1.S1_at--899--9311Chr12:24711781..24711805 (25 bp)
TCCCTTGGCTTCCTTACTAATTTTG
LOC_Os12g40010
OsAffx.32110.1.S1_at--322--3191Chr12:24711816..24711840 (25 bp)
CAATATGTGGGCATTTGTCGCCAAG
LOC_Os12g40010
OsAffx.32110.1.S1_at--1045--9591Chr12:24711853..24711877 (25 bp)
TCATTTCTAGAAAGTGAGCGCCTCA
LOC_Os12g40010
Target Sequence 
GGGCTTAACAGAACTACTCTTAGATTAAGATACCTGATCAATTGGCTAGTAACTTCACTGTTGCAGCTGAGGTTACCAGG
CTCAAAAGGTGGTGATGGAGACCCCCTTGTCCACATTTATGGCCCAAAGATTAAGTACGAAAGGGGAGCTGCTGTTGCTT
TCAATGTGAAGCAAAGTGATGGCACTTTTGTTAATGCTGAAGTTGTCCAGAAGATTGCGGAGAAGAATGGCATATCTCTT
GGCATTGGTTTTCTCAGTCATATAAAGGTGGACCTGAACCACAAACAGTTAAATGGAGCATTCGATATACCTGAGGCTTC
CTTCTATAAGAACGGCCGCAAAGACAGTAAAAAGGTGACCATAAGAGTTGAAGTTGTGACTGCTTCCCTTGGCTTCCTTA
CTAATTTTGAAGACGTGTACAATATGTGGGCATTTGTCGCCAAGTTTCTGGATCCTTCATTTCTAGAAAGTGAGCGCCTC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis