Browse Element(s) Details


OsAffx.20042.1.S1_s_at

Description tigr:9640.m03906
TID=OsAffx.20042.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Kinesin motor domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3998011/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39930OsAffx.32108.1.S1_at11/1112+24648104..24648630hypothetical protein
LOC_Os12g39930OsAffx.32108.1.S1_x_at11/1112+24648104..24648630hypothetical protein
LOC_Os12g39930OsAffx.32339.1.S1_x_at2/1112+24648104..24648630hypothetical protein
LOC_Os12g39940NANA12+24650767..24652855retrotransposon protein, putative, unclassified
LOC_Os12g39950OsAffx.29757.4.S1_x_at11/1112+24654676..24659054hypothetical protein
LOC_Os12g39950OsAffx.29757.1.S1_x_at3/1112+24654676..24659054hypothetical protein
LOC_Os12g39950OsAffx.29757.3.S1_x_at1/1112+24654676..24659054hypothetical protein
LOC_Os12g39960OsAffx.7839.1.S1_at11/1112+24661943..24662535transposon protein, putative, unclassified
LOC_Os12g39970Os.14325.1.S1_at9/1112+24664170..24667227expressed protein
LOC_Os12g39980OsAffx.20042.1.S1_s_at11/1112+24669649..24685756Kinesin motor domain containing protein, expressed
LOC_Os12g39980OsAffx.20042.1.S1_at11/1112+24669649..24685756Kinesin motor domain containing protein, expressed
LOC_Os12g39990NANA12+24690244..24691041Dof domain, zinc finger family protein
LOC_Os12g40000OsAffx.20043.1.S1_at11/1112+24694200..24696598hypothetical protein
LOC_Os12g40010OsAffx.32110.1.S1_at11/1112+24709186..24712168expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20042.1.S1_s_at--308--1431Chr12:24670323..24670347 (25 bp)
AGAAAACCTGTCGAGCCTGTGTGCC
LOC_Os12g39980
OsAffx.20042.1.S1_s_at--392--1291Chr12:24670125..24670149 (25 bp)
AGATCCAACTCCGTATTGCTTCAAT
LOC_Os12g39980
OsAffx.20042.1.S1_s_at--147--2031Chr12:24669986..24670010 (25 bp)
ACTACTGCATGAAAAGGCCCGTTTA
LOC_Os12g39980
OsAffx.20042.1.S1_s_at--919--1031Chr12:24669926..24669950 (25 bp)
AGGTCGCTCCAGATCACCGAGTGTG
LOC_Os12g39980
OsAffx.20042.1.S1_s_at--192--6131Chr12:24669908..24669932 (25 bp)
GAGTGTGTGCAGATCACCAAGCATC
LOC_Os12g39980
OsAffx.20042.1.S1_s_at--509--6311Chr12:24669873..24669897 (25 bp)
GATGACGCAGCTGACTCAAATAGAA
LOC_Os12g39980
OsAffx.20042.1.S1_s_at--395--4111Chr12:24669847..24669871 (25 bp)
CGAAGCAAGTGTTGTACTGTACATA
LOC_Os12g39980
OsAffx.20042.1.S1_s_at--478--7911Chr12:24669817..24669841 (25 bp)
GGTTGCTACATCGTTTTGTTACTCG
LOC_Os12g39980
OsAffx.20042.1.S1_s_at--392--10231Chr12:24669803..24669827 (25 bp)
TTTGTTACTCGTTAGTTACCAGCTA
LOC_Os12g39980
OsAffx.20042.1.S1_s_at--963--7331Chr12:24669746..24669770 (25 bp)
GTGCAGTACAGTTTTGCTGCGAGTA
LOC_Os12g39980
OsAffx.20042.1.S1_s_at--479--9131Chr12:24669683..24669707 (25 bp)
TGCTGGCCTAGTTAATTGAATCATG
LOC_Os12g39980
Target Sequence 
AGAAAACCTGTCGAGCCTGTGTGCCACCGTTCTGAAGATCGCTGGAGTTAGAAACCATGAGTCTGATGCGAGTCTTTTGA
AAGCATTGGAAGCCTTAAATCAGATCCAACTCCGTATTGCTTCAATGGAGGCTGGGGTTGAGGATCTTAAACTGAAGTGC
AAACTACTGCATGAAAAGGCCCGTTTATCGGAGCTTCGGAGCGAGTCATCTTCTCTTAGCTCAGGTCGCTCCAGATCACC
GAGTGTGTGCAGATCACCAAGCATCTCGTCATTCCGATGACGCAGCTGACTCAAATAGAAGCGAAGCAAGTGTTGTACTG
TACATAATATTGGTTGCTACATCGTTTTGTTACTCGTTAGTTACCAGCTAACCACCTACCGACCTGTGCCCCAAAGCATC
TCGTGCAGTACAGTTTTGCTGCGAGTAGAGTAGGGGCATTAACCATGCATTGCTGATGTTGCATCTGCTGGCCTAGTTAA
TTGAATCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20042.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis