Browse Element(s) Details


OsAffx.20043.1.S1_at

Description tigr:9640.m03908
TID=OsAffx.20043.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4000011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39980OsAffx.20042.1.S1_s_at11/1112+24669649..24685756Kinesin motor domain containing protein, expressed
LOC_Os12g39980OsAffx.20042.1.S1_at11/1112+24669649..24685756Kinesin motor domain containing protein, expressed
LOC_Os12g39990NANA12+24690244..24691041Dof domain, zinc finger family protein
LOC_Os12g40000OsAffx.20043.1.S1_at11/1112+24694200..24696598hypothetical protein
LOC_Os12g40010OsAffx.32110.1.S1_at11/1112+24709186..24712168expressed protein
LOC_Os12g40020NANA12+24713720..24714865retrotransposon protein, putative, unclassified
LOC_Os12g40030OsAffx.22947.1.S1_x_at5/1112+24716948..24721493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g40030OsAffx.22947.2.S1_x_at3/1112+24716948..24721493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g40030OsAffx.22947.5.S1_x_at2/1112+24716948..24721493retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g40030OsAffx.22947.3.S1_x_at2/1112+24716948..24721493retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20043.1.S1_at--560--5151Chr12:24696532..24696556 (25 bp)
GCAACCGACCTGCCATGGGACACAG
LOC_Os12g40000
OsAffx.20043.1.S1_at--239--4671Chr12:24696500..24696524 (25 bp)
GCGGGACCATCTCGATTCCGCACTT
LOC_Os12g40000
OsAffx.20043.1.S1_at--948--6571Chr12:24696487..24696511 (25 bp)
GATTCCGCACTTCCAGTCCGTGCGA
LOC_Os12g40000
OsAffx.20043.1.S1_at--1121--1951Chr12:24696479..24696503 (25 bp)
ACTTCCAGTCCGTGCGACCGAGTCA
LOC_Os12g40000
OsAffx.20043.1.S1_at--980--4011Chr12:24696406..24696430 (25 bp)
CGTTACCATCTTGTTTCAGCTTATC
LOC_Os12g40000
OsAffx.20043.1.S1_at--978--9971Chr12:24696403..24696427 (25 bp)
TACCATCTTGTTTCAGCTTATCCAG
LOC_Os12g40000
OsAffx.20043.1.S1_at--1082--3551Chr12:24696400..24696424 (25 bp)
CATCTTGTTTCAGCTTATCCAGCGT
LOC_Os12g40000
OsAffx.20043.1.S1_at--797--7671Chr12:24694267..24694291 (25 bp)
GGGTTTTATACATGGGACTGAAGTG
LOC_Os12g40000
OsAffx.20043.1.S1_at--633--8191Chr12:24694237..24694261 (25 bp)
GGAAGGAGGATGACCGTGCTTTTAA
LOC_Os12g40000
OsAffx.20043.1.S1_at--9--8031Chr12:24694233..24694257 (25 bp)
GGAGGATGACCGTGCTTTTAAAATA
LOC_Os12g40000
OsAffx.20043.1.S1_at--366--7991Chr12:24694230..24694254 (25 bp)
GGATGACCGTGCTTTTAAAATAGTA
LOC_Os12g40000
Target Sequence 
GCAACCGACCTGCCATGGGACACAGCCGCGCCGCGGGACCATCTCGATTCCGCACTTCCAGTCCGTGCGACCGAGTCAGT
CCCGCATCGCCAATCCACGCCACTGCTTTCCCGCGTCGCCGCTCTGCGTTACCATCTTGTTTCAGCTTATCCAGCGTGCG
GGGAAGGGGTTTTATACATGGGACTGAAGTGGGTAGGGAAGGAGGATGACCGTGCTTTTAAAATAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis