Browse Element(s) Details


OsAffx.20049.1.S1_x_at

Description tigr:9640.m03932
TID=OsAffx.20049.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4024011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40200OsAffx.20048.1.S1_at11/1112+24849179..24852034hypothetical protein
LOC_Os12g40200Os.52178.1.S1_at1/1112+24849179..24852034hypothetical protein
LOC_Os12g40210OsAffx.7841.1.S1_at11/1112+24858494..24858930hypothetical protein
LOC_Os12g40220OsAffx.24119.1.S1_at3/1112+24865335..24865688hypothetical protein
LOC_Os12g40230OsAffx.25936.1.S1_s_at8/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40230OsAffx.25936.7.S1_s_at8/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40230OsAffx.25936.2.S1_x_at7/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40230OsAffx.25936.5.S1_x_at2/1112+24869226..24871717transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40240OsAffx.20049.1.S1_x_at11/1112+24872172..24873881hypothetical protein
LOC_Os12g40240OsAffx.6016.1.S1_at5/1112+24872172..24873881hypothetical protein
LOC_Os12g40240OsAffx.6016.1.S1_x_at4/1112+24872172..24873881hypothetical protein
LOC_Os12g40250Os.10827.1.S1_x_at9/1112+24874566..24877838transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40250Os.46055.2.S1_x_at6/1112+24874566..24877838transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40260NANA12+24881964..24883484transducin family protein, putative, expressed
LOC_Os12g40270OsAffx.32117.1.S1_x_at11/1112+24889801..24890274hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20049.1.S1_x_at--836--68562Chr12:24872202..24872226 (25 bp)
GTTTGCTTCTTCCTGGATCCTCGCA
LOC_Os12g40240
OsAffx.20049.1.S1_x_at--374--102764Chr12:24872203..24872227 (25 bp)
TTTGCTTCTTCCTGGATCCTCGCAG
LOC_Os12g40240
OsAffx.20049.1.S1_x_at--514--107365Chr12:24872204..24872228 (25 bp)
TTGCTTCTTCCTGGATCCTCGCAGG
LOC_Os12g40240
OsAffx.20049.1.S1_x_at--876--90763Chr12:24872205..24872229 (25 bp)
TGCTTCTTCCTGGATCCTCGCAGGT
LOC_Os12g40240
OsAffx.20049.1.S1_x_at--926--48964Chr12:24872206..24872230 (25 bp)
GCTTCTTCCTGGATCCTCGCAGGTG
LOC_Os12g40240
OsAffx.20049.1.S1_x_at--987--105562Chr12:24872208..24872232 (25 bp)
TTCTTCCTGGATCCTCGCAGGTGTT
LOC_Os12g40240
OsAffx.20049.1.S1_x_at--868--95764Chr12:24872209..24872233 (25 bp)
TCTTCCTGGATCCTCGCAGGTGTTG
LOC_Os12g40240
OsAffx.20049.1.S1_x_at--749--36365Chr12:24872210..24872234 (25 bp)
CTTCCTGGATCCTCGCAGGTGTTGG
LOC_Os12g40240
OsAffx.20049.1.S1_x_at--975--106564Chr12:24872211..24872235 (25 bp)
TTCCTGGATCCTCGCAGGTGTTGGG
LOC_Os12g40240
OsAffx.20049.1.S1_x_at--557--3991Chr12:24873656..24873680 (25 bp)
CGTGGATCCCGACATCGTCTTGGGA
LOC_Os12g40240
OsAffx.20049.1.S1_x_at--34--7451Chr12:24873752..24873776 (25 bp)
GGGAAGGTCAGGGTCGGGATCGGCG
LOC_Os12g40240
Target Sequence 
GTTTGCTTCTTCCTGGATCCTCGCAGGTGTTGGGGAGGGCAGGAGGAGGGGGGCGTCGCACCTGGTCGGCGGTCGAGGAG
AAGAGGTCGGGGAGGCGGCGTCTTGGCGGACGACGTCCGGGTCGTGGATCCCGGCGTCGGGGAGTTCTGGGAGGCGGTGG
TCGGCGGTGCAGTTGCCGGCGTCGTGGATCCCGACATCGTCTTGGGAGGTCGGGTACGCAGCGAGGACGACGGCCTTGAT
GGTCAGCGGTGCAGGCCGGTGTCGTGGATCCCGGCGTCGGGAAGGTCAGGGTCGGGATCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20049.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis