Browse Element(s) Details


OsAffx.20051.1.S1_at

Description tigr:9640.m03943
TID=OsAffx.20051.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4033011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40290OsAffx.7842.1.S1_at11/1112+24920974..24922080hypothetical protein
LOC_Os12g40300Os.9360.1.S1_at11/1112+24924402..24927669Skp1 family, dimerisation domain containing protein, expressed
LOC_Os12g40310OsAffx.32119.1.S1_at11/1112+24928403..24930608F-box domain containing protein
LOC_Os12g40320OsAffx.20052.1.S1_x_at11/1112+24932038..24934006F-box domain containing protein
LOC_Os12g40330OsAffx.20051.1.S1_at11/1112+24940864..24941484expressed protein
LOC_Os12g40340Os.7648.1.S1_at11/1112+24942255..24947447EXS family protein, putative, expressed
LOC_Os12g40350OsAffx.20052.1.S1_x_at11/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40350OsAffx.20052.2.S1_at1/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40350Os.54823.1.S1_at1/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40360Os.54823.1.S1_at9/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40360OsAffx.20052.1.S1_x_at2/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40360OsAffx.20052.2.S1_at1/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40370OsAffx.32119.1.S1_at2/1112+24964605..24967298F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20051.1.S1_at--982--3231Chr12:24940894..24940918 (25 bp)
CAAGAAGCTAGTCGGCCTTCGATAT
LOC_Os12g40330
OsAffx.20051.1.S1_at--659--8431Chr12:24940907..24940931 (25 bp)
GGCCTTCGATATCATGGCGTCCATG
LOC_Os12g40330
OsAffx.20051.1.S1_at--774--7371Chr12:24941001..24941025 (25 bp)
GTGACGAGCTGCCTGTACCTGCACA
LOC_Os12g40330
OsAffx.20051.1.S1_at--861--9311Chr12:24941220..24941244 (25 bp)
TCGCCGTAGCTTCCTAGCTTAATCA
LOC_Os12g40330
OsAffx.20051.1.S1_at--814--1551Chr12:24941235..24941259 (25 bp)
AGCTTAATCAGCTCGTGCTGTCGTG
LOC_Os12g40330
OsAffx.20051.1.S1_at--38--7331Chr12:24941257..24941281 (25 bp)
GTGCACCGCAGCAATGTCCATTGAT
LOC_Os12g40330
OsAffx.20051.1.S1_at--393--7271Chr12:24941272..24941296 (25 bp)
GTCCATTGATTCTTGTGTAGATCGA
LOC_Os12g40330
OsAffx.20051.1.S1_at--1100--8591Chr12:24941320..24941344 (25 bp)
TGGTCTCATACATCCATGGAGCCAT
LOC_Os12g40330
OsAffx.20051.1.S1_at--629--711Chr12:24941367..24941391 (25 bp)
ATGATCGATGTCCATGGTGACCACC
LOC_Os12g40330
OsAffx.20051.1.S1_at--548--10431Chr12:24941410..24941434 (25 bp)
TTAGGAACCTAATTAGTGGCTTAGT
LOC_Os12g40330
OsAffx.20051.1.S1_at--859--7391Chr12:24941425..24941449 (25 bp)
GTGGCTTAGTGGATGCTTTTGTTTA
LOC_Os12g40330
Target Sequence 
CAAGAAGCTAGTCGGCCTTCGATATCATGGCGTCCATGGTGTCCAAGAACTCGCCGCCGGCGACGGCGAGGCACGAGGAC
GGCGGCGCGGGAGGGGCGGCGCCGCCGGTGACGAGCTGCCTGTACCTGCACAGGCCGGAGCCCGGCGCGGGGGCGCTGGA
CAAGGACGCCGTGCTCCGGCGCATCCGCCACCGGCGGCGAGCCAACCGCCTCCGCGAGTCGCTGCAGTCTCTCCTCCTGA
CGCAGCAGCAGCAGGCGGCGCCGCCGCCGGAGACGGCGGCGGACAAGGGCCGCGAGCGGCTCGCCTGGCTCGACGACGCC
TTCTCGTCGCCGTAGCTTCCTAGCTTAATCAGCTCGTGCTGTCGTGCACCGCAGCAATGTCCATTGATTCTTGTGTAGAT
CGATCAGATCAATCATGATGGAATCATGGTCTCATACATCCATGGAGCCATGGAGGATGAAGCATGCATGGATATGATCG
ATGTCCATGGTGACCACCAAGAATAATAGAAAGTAATTAGGAACCTAATTAGTGGCTTAGTGGATGCTTTTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20051.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis