Browse Element(s) Details


OsAffx.20052.1.S1_x_at

Description tigr:9640.m03942
TID=OsAffx.20052.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4035011/11F-box domain containing protein
LOC_Os12g4032011/11F-box domain containing protein
LOC_Os12g403602/11F-box domain containing protein, expressed
LOC_Os02g387001/11hAT family dimerisation domain containing protein
LOC_Os03g104301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40300Os.9360.1.S1_at11/1112+24924402..24927669Skp1 family, dimerisation domain containing protein, expressed
LOC_Os12g40310OsAffx.32119.1.S1_at11/1112+24928403..24930608F-box domain containing protein
LOC_Os12g40320OsAffx.20052.1.S1_x_at11/1112+24932038..24934006F-box domain containing protein
LOC_Os12g40330OsAffx.20051.1.S1_at11/1112+24940864..24941484expressed protein
LOC_Os12g40340Os.7648.1.S1_at11/1112+24942255..24947447EXS family protein, putative, expressed
LOC_Os12g40350OsAffx.20052.1.S1_x_at11/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40350OsAffx.20052.2.S1_at1/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40350Os.54823.1.S1_at1/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40360Os.54823.1.S1_at9/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40360OsAffx.20052.1.S1_x_at2/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40360OsAffx.20052.2.S1_at1/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40370OsAffx.32119.1.S1_at2/1112+24964605..24967298F-box domain containing protein
LOC_Os12g40380OsAffx.7843.1.S1_at11/1112+24968681..24969813hypothetical protein
LOC_Os12g40390OsAffx.32120.1.S1_at10/1112+24970908..24973526hypothetical protein
LOC_Os12g40400OsAffx.20053.1.S1_at11/1112+24974169..24974745hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20052.1.S1_x_at--632--3612Chr12:24933075..24933099 (25 bp)
CTTGGAGATCCAAGGCATAGTGATT
LOC_Os12g40320
OsAffx.20052.1.S1_x_at--974--6252Chr12:24933207..24933231 (25 bp)
GATGGTGGAGCAGCCTCCAGAGATC
LOC_Os12g40320
OsAffx.20052.1.S1_x_at--467--4472Chr12:24933219..24933243 (25 bp)
GCCTCCAGAGATCCGTTCTGTCAGG
LOC_Os12g40320
OsAffx.20052.1.S1_x_at--734--733Chr12:24933283..24933307 (25 bp)
ATGTTGCCCCGCCAGATAGAGCAGA
LOC_Os12g40320
OsAffx.20052.1.S1_x_at--109--5892Chr12:24933301..24933325 (25 bp)
GAGCAGATCCTGAGGAGTTTCCCAC
LOC_Os12g40320
OsAffx.20052.1.S1_x_at--352--6172Chr12:24933312..24933336 (25 bp)
GAGGAGTTTCCCACGCGTAAAATCA
LOC_Os12g40320
OsAffx.20052.1.S1_x_at--494--6033Chr12:24933631..24933655 (25 bp)
GAGATGCGATGACGTTACACAAGCA
LOC_Os12g40320
OsAffx.20052.1.S1_x_at--353--10493Chr12:24933645..24933669 (25 bp)
TTACACAAGCAGAAGGGCTCCTCCA
LOC_Os12g40320
OsAffx.20052.1.S1_x_at--494--9652Chr12:24933933..24933957 (25 bp)
TCAGAGGCGATCTTGTGTCCTTTGT
LOC_Os12g40320
OsAffx.20052.1.S1_x_at--599--432Chr12:24933942..24933966 (25 bp)
ATCTTGTGTCCTTTGTTGCAGCTGA
LOC_Os12g40320
OsAffx.20052.1.S1_x_at--141--3675Chr12:24933952..24933976 (25 bp)
CTTTGTTGCAGCTGATGCTTCCGGA
LOC_Os12g40320
Target Sequence 
CTTGGAGATCCAAGGCATAGTGATTNAGGCTGGGATGGTGGAGCAGCCTCCAGAGATCCGTTCTGTCAGGNATCTCGGCT
TACGGGTGAACTACACANCGATGGTCGACATGTTGCCCCGCCAGATAGAGCAGATCCTGAGGAGTTTCCCACGCGTAAAA
TCACTGNANATCNNGAGATGCGATGACGTTACACAAGCAGAAGGGCTCCTCCANTGGNACGATGNACACTATGANGGGAN
CAATTTCTTCGATGGCCTTGAGNGNTTCAACNATCACCTGAGGTGGATATATCTTANAGGTTTCAGAGGGGGNAAGTGTG
AAGTTGCTCTGATGAAANNCATGCTNGACAAAGCTAGNGTCCTGACACNGTTAAGGATGGANTACTCGNCANNGNNNNGN
AGCCTCNNCNAGCNCACCCTGAATNAGCTCNACTTGTCTCTCNGGANTTTCAAGNNGCACACTCCAAATGNTGCCGTCAG
AGGCGATCTTGTGTCCTTTGTTGCAGCTGATGCTTCCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20052.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis