Browse Element(s) Details


OsAffx.20054.1.S1_at

Description tigr:9640.m03951
TID=OsAffx.20054.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4041910/11Protein kinase domain containing protein, expressed
LOC_Os10g102441/11Alanyl-tRNA synthetase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40360Os.54823.1.S1_at9/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40360OsAffx.20052.1.S1_x_at2/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40360OsAffx.20052.2.S1_at1/1112+24960579..24962915F-box domain containing protein, expressed
LOC_Os12g40370OsAffx.32119.1.S1_at2/1112+24964605..24967298F-box domain containing protein
LOC_Os12g40380OsAffx.7843.1.S1_at11/1112+24968681..24969813hypothetical protein
LOC_Os12g40390OsAffx.32120.1.S1_at10/1112+24970908..24973526hypothetical protein
LOC_Os12g40400OsAffx.20053.1.S1_at11/1112+24974169..24974745hypothetical protein
LOC_Os12g40419OsAffx.32121.1.S1_at11/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40419Os.53744.2.S1_x_at10/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40419OsAffx.20054.1.S1_at10/1112+24981489..24992912Protein kinase domain containing protein, expressed
LOC_Os12g40440Os.37806.1.S1_at5/1112+24993751..24996177expressed protein
LOC_Os12g40450NANA12+24996604..24998662lipoate-protein ligase B containing protein, expressed
LOC_Os12g40460OsAffx.32122.1.S1_at11/1112+25001878..25002955Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g40460OsAffx.32122.1.S1_x_at11/1112+25001878..25002955Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g40470Os.56029.1.S1_at3/1112+25006732..25007557DC1 domain-containing protein, putative, expressed
LOC_Os12g40480Os.51888.1.S1_at11/1112+25011742..25015010expressed protein
LOC_Os12g40490Os.26366.1.S1_at11/1112+25017521..25023123LIM domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006419biological_processalanyl-tRNA aminoacylation
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20054.1.S1_at--837--371Chr12:24981703..24981727 (25 bp)
ATCAAGCTGGCCTGCAACGAGAGCG
LOC_Os12g40419
OsAffx.20054.1.S1_at--130--8471Chr12:24981710..24981734 (25 bp)
TGGCCTGCAACGAGAGCGGCTCGAC
LOC_Os12g40419
OsAffx.20054.1.S1_at--351--1031Chr12:24981986..24982010 (25 bp)
AGGTCATGTCCAAGATGCTCCGCAC
LOC_Os12g40419
OsAffx.20054.1.S1_at--1127--4011Chr12:24982040..24982064 (25 bp)
CGTCGGCGTCGTCCCTGACGTGCAT
LOC_Os12g40419
OsAffx.20054.1.S1_at--47--3791Chr12:24982099..24982123 (25 bp)
CTCGGCGTCGGCATGTTCGCCCGGT
LOC_Os12g40419
OsAffx.20054.1.S1_at--1032--3491Chr12:24982110..24982134 (25 bp)
CATGTTCGCCCGGTGGGACACGGTC
LOC_Os12g40419
OsAffx.20054.1.S1_at--31--4371Chr12:24982126..24982145 (20 bp)
GACACGGTCGAGGAGCCCCGATTTA
LOC_Os12g40419
OsAffx.20054.1.S1_at--963--5851NONE
GAGCCCCGATTTATTCGTAGCGACT
NONE
OsAffx.20054.1.S1_at--635--24515Chr12:24983152..24983176 (25 bp)
CAACATTAACGGCTTATTCTTTGGC
LOC_Os12g40419
OsAffx.20054.1.S1_at--929--9051Chr12:24983169..24983193 (25 bp)
TCTTTGGCCGTTTAAGCCAAACGAT
LOC_Os12g40419
OsAffx.20054.1.S1_at--24--4412Chr12:24983184..24983208 (25 bp)
GCCAAACGATGAGGCTGGTTGACAA
LOC_Os12g40419
Target Sequence 
ATCAAGCTGGCCTGCAACGAGAGCGGCTCGACGGCGGCGCTGATCCTCCCAGACAACGCCGCTGCGGATACGGCGGCGGA
GTCGTACACCGTCGTGGCCTCCTCGTTCAACCGGACCGCCTCCACCTTCGTCGTCTCCCTCCCGCCGGCATGCAACCGCA
CCGTCGCCGGGGCGAGGCGGCGGCTCTCCGGCGCCAACTACGGCGTGTCGTCGCGCACCGGCATGTTCCTCCGCGGCGGC
TGCCGCAACGCGACGGGCGCCACCGCCTGCAGCGTCCCCGCCGAGGTCATGTCCAAGATGCTCCGCACGGCGCAGTGCGC
CGGCGGGGACGAGGCCGCGTCGGCGTCGTCCCTGACGTGCATCGCCTCGATCCCGCCCAACTCCACGGCCGAGGCGCTCG
GCGTCGGCATGTTCGCCCGGTGGGACACGGTCGAGGAGCCCCGATTTATTCGTAGCGACTTAAAAGCCAACATTAACGGC
TTATTCTTTGGCCGTTTAAGCCAAACGATGAGGCTGGTTGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis