Browse Element(s) Details


OsAffx.20116.1.S1_at

Description tigr:9640.m04365
TID=OsAffx.20116.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cytochrome P450, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4429011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g44220OsAffx.32185.1.S1_x_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative
LOC_Os12g44220OsAffx.32185.1.S1_s_at11/1112+27392907..27393875Cell Division Protein AAA ATPase family, putative
LOC_Os12g44230Os.5853.2.S1_x_at11/1112+27396595..27401472HIPL1 protein precursor, putative, expressed
LOC_Os12g44230Os.5853.1.S1_at11/1112+27396595..27401472HIPL1 protein precursor, putative, expressed
LOC_Os12g44240Os.15359.1.S1_at11/1112+27402712..27404908BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein, putative, expressed
LOC_Os12g44250OsAffx.32186.1.S1_at11/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250OsAffx.1407.1.S1_at3/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44250Os.55414.1.S1_at2/1112+27405565..27407849Synaptobrevin family protein, expressed
LOC_Os12g44260OsAffx.20114.1.S1_x_at11/1112+27408160..27408829DnaJ domain containing protein
LOC_Os12g44260OsAffx.20114.1.S1_at11/1112+27408160..27408829DnaJ domain containing protein
LOC_Os12g44270OsAffx.7886.1.S1_at11/1112+27410275..27410646hypothetical protein
LOC_Os12g44280NANA12+27413047..27413997hypothetical protein
LOC_Os12g44290OsAffx.20116.1.S1_at11/1112+27417687..27419435Cytochrome P450 family protein, expressed
LOC_Os12g44300OsAffx.32187.1.S1_s_at11/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44300Os.10071.1.S1_at6/1112+27428036..27430667Sodium/hydrogen exchanger family protein, expressed
LOC_Os12g44310Os.10598.1.S1_at10/1112+27431232..274384309,10-9',10' carotenoid cleavage dioxygenase 1, putative, expressed
LOC_Os12g44320OsAffx.20117.1.S1_s_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_x_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed
LOC_Os12g44320Os.55718.1.S1_at11/1112+27440868..27443689D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20116.1.S1_at--1086--8871Chr12:27418152..27418176 (25 bp)
TGAGGCTGATCTTCGGGCTCGTGAC
LOC_Os12g44290
OsAffx.20116.1.S1_at--1017--8311Chr12:27418137..27418161 (25 bp)
GGCTCGTGACCTCAAATACCTTAAG
LOC_Os12g44290
OsAffx.20116.1.S1_at--375--9311Chr12:27418074..27418098 (25 bp)
TCCCCTGTTGGTGCCACGAGAAAGT
LOC_Os12g44290
OsAffx.20116.1.S1_at--1100--3551Chr12:27417999..27418023 (25 bp)
CATAGTGAACTCATGGGCCATCTCG
LOC_Os12g44290
OsAffx.20116.1.S1_at--269--7731Chr12:27417917..27417941 (25 bp)
GGTGGCATCGACTTCTATGGTAGCA
LOC_Os12g44290
OsAffx.20116.1.S1_at--449--6091Chr12:27417887..27417911 (25 bp)
GAGTACACGCAATTCGGGTCAGGAC
LOC_Os12g44290
OsAffx.20116.1.S1_at--629--10851Chr12:27417833..27417857 (25 bp)
TTGGCCAGCATGGAGCTCACGCTAG
LOC_Os12g44290
OsAffx.20116.1.S1_at--462--5931Chr12:27417783..27417807 (25 bp)
GAGCATGCCGGATGGAGCCACCGAA
LOC_Os12g44290
OsAffx.20116.1.S1_at--137--1231Chr12:27417759..27417783 (25 bp)
AGTTGACATGACTGAGGCTCCCGGA
LOC_Os12g44290
OsAffx.20116.1.S1_at--536--851Chr12:27417745..27417769 (25 bp)
AGGCTCCCGGACTAGGTGTTCGTAG
LOC_Os12g44290
OsAffx.20116.1.S1_at--52--8811Chr12:27417729..27417753 (25 bp)
TGTTCGTAGGAAGACACCGCTGCTT
LOC_Os12g44290
Target Sequence 
TGAGGCTGATCTTCGGGCTCGTGACCTCAAATACCTTAAGCTAGTGATGAAGGAGACGCTGAGGCTGCACCCTCCAGCTC
CCCTGTTGGTGCCACGAGAAAGTATTGATGCATGCGAGATCAATGGATACATGATCCCAGCGAAGGCGAGAGTCATAGTG
AACTCATGGGCCATCTCGAGAGACCCGAGGTACTGGGAGGATGCGGAGGAGTTCAAGCCAGAGAGGTTTGCCGAGGGTGG
CATCGACTTCTATGGTAGCAACTATGAGTACACGCAATTCGGGTCAGGACGGAGGATGTGCCCAGGGTACAACTATGGGT
TGGCCAGCATGGAGCTCACGCTAGCGCAACTGCTTCACTCCTTCGACTGGAGCATGCCGGATGGAGCCACCGAAGTTGAC
ATGACTGAGGCTCCCGGACTAGGTGTTCGTAGGAAGACACCGCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis