Browse Element(s) Details


OsAffx.20120.1.S1_at

Description tigr:9638.m03939
TID=OsAffx.20120.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4293010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42880OsAffx.7892.1.S1_at11/1110+22788430..22796397retrotransposon protein, putative, unclassified
LOC_Os10g42900Os.46613.1.S2_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_s_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42910OsAffx.13097.1.S1_s_at4/1110+22802600..22812009transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g42920OsAffx.6947.1.S1_at11/1110+22812227..22812651hypothetical protein
LOC_Os10g42930OsAffx.20120.1.S1_at10/1110+22813495..22814824hypothetical protein
LOC_Os10g42930Os.46738.1.S1_s_at1/1110+22813495..22814824hypothetical protein
LOC_Os10g42940Os.4758.1.S1_at10/1110+22816803..22818952ADP-ribosylation factor, putative, expressed
LOC_Os10g42950Os.2989.1.S1_at11/1110+22819042..22823531Protein kinase domain containing protein, expressed
LOC_Os10g42960Os.39043.1.S1_s_at9/1110+22827191..22829895SSS sodium solute transporter superfamily protein, expressed
LOC_Os10g42970OsAffx.11826.1.S1_at11/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.15132.1.S1_x_at8/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.23711.1.S1_x_at2/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.23711.1.S1_at1/1110+22830776..22832724expressed protein
LOC_Os10g42980Os.2987.3.S1_x_at11/1110+22835526..22837607retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g42999NANA10+22839762..22846039retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20120.1.S1_at--263--9791Chr10:22814408..22814432 (25 bp)
TAACCGGAAGCTGGCTGTTCTACAC
LOC_Os10g42930
OsAffx.20120.1.S1_at--911--8791Chr10:22814393..22814417 (25 bp)
TGTTCTACACCATGCCATCGGCGAT
LOC_Os10g42930
OsAffx.20120.1.S1_at--540--10831Chr10:22814346..22814370 (25 bp)
TTGGTGTGTCGAGCAACAAGCCCGC
LOC_Os10g42930
OsAffx.20120.1.S1_at--417--3631Chr10:22814311..22814335 (25 bp)
CTTGCGAGCTCAATGTCCTATACAT
LOC_Os10g42930
OsAffx.20120.1.S1_at--212--7271Chr10:22814297..22814321 (25 bp)
GTCCTATACATATCTCATCCTGAGT
LOC_Os10g42930
OsAffx.20120.1.S1_at--1125--7951Chr10:22814259..22814281 (23 bp)
GGATCTCCCATGGTCGGATTCGCTG
LOC_Os10g42930
OsAffx.20120.1.S1_at--309--7931Chr10:22814115..22814266 (25 bp)
GGATTCGCTGGAGATTGCCCGTATA
LOC_Os10g42930
OsAffx.20120.1.S1_at--550--6591Chr10:22814103..22814127 (25 bp)
GATTGCCCGTATAGCTACTTGATGG
LOC_Os10g42930
OsAffx.20120.1.S1_at--140--3431Chr10:22813550..22814061 (25 bp)
CAGAGTGATCTTACTGGCGCGTTCA
LOC_Os10g42930
OsAffx.20120.1.S1_at--561--3291Chr10:22813518..22813542 (25 bp)
CAAAGTCCAGCAGCCGTGTCCGGTG
LOC_Os10g42930
OsAffx.20120.1.S1_at--697--171Chr10:22813405..22813429 (25 bp)
ATTTTCATTCGTACTGTGAGCGGAC
NONE
Target Sequence 
TAACCGGAAGCTGGCTGTTCTACACCATGCCATCGGCGATGGATGCACAGCGGCAGATGAGGTTGGTGTGTCGAGCAACA
AGCCCGCTCAAGAAGAGCTTGCGAGCTCAATGTCCTATACATATCTCATCCTGAGTTGCGGCTCGTCGTCCGGATCTCCC
ATGGTCGGATTCGCTGGAGATTGCCCGTATAGCTACTTGATGGAGATTGTGGAACAGCAAGCAGCGAATGTGGGGGGCGT
CGTGCAGAGTGATCTTACTGGCGCGTTCACGCCCCGCAAAGTCCAGCAGCCGTGTCCGGTGTCACCCGACGAGCTCCGGA
CTGACCGCGGCCTGCTCGAGCGCTGCGACAATCTGCTCGGCAGCATCCTTCCCCTGCCCAAACACTACGATTTTCATTCG
TACTGTGAGCGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis