Browse Element(s) Details


OsAffx.20208.1.A1_x_at

Description gb:NM_197298.1
DB_XREF= gi:37535955
TID=OsAffx.20208.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0005K07.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g363101/11F-box protein interaction domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36270Os.46510.1.S1_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36270Os.46510.2.S1_x_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36280OsAffx.7984.1.S1_at11/1110+19069264..19071275Leucine Rich Repeat family protein
LOC_Os10g36290NANA10+19072186..19072656NA
LOC_Os10g36300OsAffx.20217.1.S1_at11/1110+19074893..19076107hypothetical protein
LOC_Os10g36310OsAffx.18532.1.S1_at11/1110+19078192..19079655F-box protein interaction domain containing protein
LOC_Os10g36310OsAffx.20208.1.A1_x_at1/1110+19078192..19079655F-box protein interaction domain containing protein
LOC_Os10g36320NANA10+19080010..19080805hypothetical protein
LOC_Os10g36340OsAffx.18534.1.S1_at11/1110+19083661..19084407expressed protein
LOC_Os10g36350Os.27975.1.A1_at11/1110+19085952..19089076MSP domain containing protein, expressed
LOC_Os10g36360Os.14210.1.S1_at11/1110+19095851..19096532expressed protein
LOC_Os10g36370Os.10854.2.S1_x_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S1_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S2_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20208.1.A1_x_at--1070--1852Chr06:25402068..25402090 (23 bp)
ACGACGACATGTCCGGCGACATCGC
NONE
OsAffx.20208.1.A1_x_at--872--2111Chr10:19283465..19283489 (25 bp)
ACATGTCCGGCGACATCGCGGCGCA
NONE
OsAffx.20208.1.A1_x_at--786--5651Chr10:19283454..19283478 (25 bp)
GACATCGCGGCGCACCCCAGGAAGA
NONE
OsAffx.20208.1.A1_x_at--492--1511Chr10:19283196..19283220 (25 bp)
AGCAGCGCCGACTCGAACGTGCCGT
NONE
OsAffx.20208.1.A1_x_at--11--9371Chr10:19283184..19283208 (25 bp)
TCGAACGTGCCGTACGCGTCGGCGA
NONE
OsAffx.20208.1.A1_x_at--68--6991Chr10:19283173..19283197 (25 bp)
GTACGCGTCGGCGAGCACGAGGAAA
NONE
OsAffx.20208.1.A1_x_at--714--1492Chr10:19283160..19283184 (25 bp)
AGCACGAGGAAAGCGTCGTCGCGCG
NONE
OsAffx.20208.1.A1_x_at--154--5951Chr10:19283062..19283086 (25 bp)
GAGCACGGCCTCCACGAGCGCGAGA
NONE
OsAffx.20208.1.A1_x_at--533--7631Chr10:19283012..19283036 (25 bp)
GGGACGTCGCCGTCCACGACATGAG
NONE
OsAffx.20208.1.A1_x_at--70--4611Chr10:19282962..19282986 (25 bp)
GCGAGTTCCGGGTAGTGGCACGGGT
NONE
OsAffx.20208.1.A1_x_at--663--6931Chr10:19282951..19282975 (25 bp)
GTAGTGGCACGGGTGGCTCGCCGTG
NONE
Target Sequence 
ACGACGACATGTCCGGCGACATCGCGGCGCACCCCAGGAAGACCGCCTCCGACGCCGCCGCGATGGCCGCGGCCGCATCC
GCCACCGCGTCGCCCACGCCGTCGCCCGTGGTGGCGTCCGCCGCCGGCGTCCTCGACGCCGCCTGGCGCATCGCCCCCGC
GAGGCGGCACAGCTCCTTCTCCGTCCGCCTGCGCGCGCGCAGCGCCGCGGCGACCGCGGCGCCGTCGCCGCGCCGGGCGC
CGCACCGCGCCCCCGCCACGCTCTCCCTCAGCGCGAGCAGCGCCGACTCGAACGTGCCGTACGCGTCGGCGAGCACGAGG
AAAGCGTCGTCGCGCGCCGCCGCCGCCGCCTCGCCACCGTGGAGCGCCGCGACGGCCACCGGCAGCTCGAGGACCTCGCC
GAGCGCGGCGAGCACGGCCTCCACGAGCGCGAGACCCGAGCTCCCCTCGCCGCCGGAGCGGGACGTCGCCGTCCACGACA
TGAGCTCCCGCACACCGCCGTCGAGCCGCGCGAGTTCCGGGTAGTGGCACGGGTGGCTCGCCGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20208.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis