Browse Element(s) Details


OsAffx.20214.1.S1_at

Description tigr:9638.m03240
TID=OsAffx.20214.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g364108/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36370Os.10854.2.S1_x_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S1_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36370Os.10854.1.S2_a_at11/1110+19101460..19110154Chaperone protein dnaJ 13, putative, expressed
LOC_Os10g36380Os.35344.3.S1_x_at7/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36380Os.35344.18.S1_x_at7/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36380OsAffx.22940.5.S1_x_at2/1110+19112394..19118158transposon protein, putative, Mutator sub-class
LOC_Os10g36390OsAffx.30689.1.S1_at9/1110+19120091..19124912multi-copper oxidase type I family protein, putative
LOC_Os10g36400Os.10475.1.A1_at11/1110+19132688..19134422expressed protein
LOC_Os10g36410OsAffx.20214.1.S1_at8/1110+19134449..19138640hypothetical protein
LOC_Os10g36420OsAffx.20213.1.S1_at10/1110+19141658..19145613YABBY protein
LOC_Os10g36420Os.52395.1.S1_x_at1/1110+19141658..19145613YABBY protein
LOC_Os10g36430NANA10+19160027..19166462retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20214.1.S1_at--430--5091NONE
GCACCCTCATGGTCTACAGGATGGG
NONE
OsAffx.20214.1.S1_at--1157--7991Chr10:19137590..19137614 (25 bp)
GGATGGGACACAAGCACACGCCGAT
LOC_Os10g36410
OsAffx.20214.1.S1_at--343--3311Chr10:19137576..19137600 (25 bp)
CACACGCCGATGTACAGTGCAGACA
LOC_Os10g36410
OsAffx.20214.1.S1_at--992--191Chr10:19137545..19137569 (25 bp)
ATTTGCTGGAACGATCCCAAGGACA
LOC_Os10g36410
OsAffx.20214.1.S1_at--797--471Chr10:19137488..19137512 (25 bp)
ATCTGCGTGCAGGTCCTTCGAGAAA
LOC_Os10g36410
OsAffx.20214.1.S1_at--57--5591NONE
GAAATAACGCACAGCTTCCGAGGCA
NONE
OsAffx.20214.1.S1_at--808--1531Chr10:19135996..19136020 (25 bp)
AGCTTCCGAGGCACATTAGGCCACT
LOC_Os10g36410
OsAffx.20214.1.S1_at--1033--51Chr10:19135982..19136006 (25 bp)
ATTAGGCCACTGCAACGGTACAGAA
LOC_Os10g36410
OsAffx.20214.1.S1_at--806--3411Chr10:19135962..19135986 (25 bp)
CAGAAGACCACACGATACAGGCAGT
LOC_Os10g36410
OsAffx.20214.1.S1_at--765--8811NONE
TGAACACCAAGGAACAACCCTAGTT
NONE
OsAffx.20214.1.S1_at--501--2131Chr10:19134481..19134505 (25 bp)
ACAGGGTACAATGGCAAGTTTGCAT
LOC_Os10g36410
Target Sequence 
GCACCCTCATGGTCTACAGGATGGGACACAAGCACACGCCGATGTACAGTGCAGACAGGAGTAATTTGCTGGAACGATCC
CAAGGACAACATAAAATTTGAAGGCGGCAGATCAAAACAAATCTGCGTGCAGGTCCTTCGAGAAATAACGCACAGCTTCC
GAGGCACATTAGGCCACTGCAACGGTACAGAAGACCACACGATACAGGCAGTGGCGGCAGGCGATTGGCAGACGACCCCC
AAGTATGCTCGCCTTGAACACCAAGGAACAACCCTAGTTACAAATGAACAAACAGGGTACAATGGCAAGTTTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis