Browse Element(s) Details


OsAffx.20275.1.S1_at

Description gb:NM_196874.1
DB_XREF= gi:37535107
TID=OsAffx.20275.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative reverse transcriptase (OSJNBa0042E19.26), mRNA.
PROD=putative reverse transcriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g412001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g454101/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g459701/11expressed protein
LOC_Os02g295101/11Non-imprinted in Prader-Willi/Angelman syndrome region protein 2homolog, putative, expressed
LOC_Os11g404501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41160OsAffx.28035.1.S1_at11/116+24626695..24627654hypothetical protein
LOC_Os06g41170NANA6+24634716..24635111retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g41180OsAffx.28036.1.S1_at11/116+24636133..24636820hypothetical protein
LOC_Os06g41180Os.49232.1.S1_x_at1/116+24636133..24636820hypothetical protein
LOC_Os06g41190NANA6+24650254..24651537retrotransposon protein, putative, unclassified
LOC_Os06g41200OsAffx.20275.1.S1_at1/116+24652426..24655124retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41210OsAffx.31656.2.S1_at10/116+24667966..24669355hypothetical protein
LOC_Os06g41220OsAffx.5073.1.S1_at11/116+24671393..24673590hypothetical protein
LOC_Os06g41229NANA6+24678225..24678457NA
LOC_Os06g41240Os.11881.1.S1_at11/116+24679292..24680232expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20275.1.S1_at--893--9052Chr10:16658504..16658528 (25 bp)
TGCATCCCGTGCTTGGCCAATTTAT
NONE
OsAffx.20275.1.S1_at--710--4952Chr10:16658547..16658772 (25 bp)
GCATTTGTTCATGATGGAGATCGTA
NONE
OsAffx.20275.1.S1_at--169--1712Chr10:16658775..16658799 (25 bp)
ACCTATCTTTTGCTGTACATCAACG
NONE
OsAffx.20275.1.S1_at--973--4732Chr10:16658786..16658810 (25 bp)
GCTGTACATCAACGATATCATCCTC
NONE
OsAffx.20275.1.S1_at--1151--9052Chr10:16658813..16658837 (25 bp)
TGCTTCGACCACATCACTACTTCAG
NONE
OsAffx.20275.1.S1_at--954--10833Chr10:16658959..16658983 (25 bp)
TTGTGGATCTTCTTCAGCGGACCGG
NONE
OsAffx.20275.1.S1_at--907--2692Chr10:16659030..16659054 (25 bp)
AAGCTCTCCGCCATAGACGGCATGC
NONE
OsAffx.20275.1.S1_at--870--1813Chr10:16659064..16659088 (25 bp)
ACCCTTCGGAGTACAGGAGCATCGC
NONE
OsAffx.20275.1.S1_at--392--5932Chr10:16659080..16659104 (25 bp)
GAGCATCGCTGGTGTTCTACAGTAC
NONE
OsAffx.20275.1.S1_at--1040--9515Chr10:16659095..16659119 (25 bp)
TCTACAGTACCTCACGTTGACTCGA
NONE
OsAffx.20275.1.S1_at--94--10452Chr10:16659204..16659228 (25 bp)
TTAAGGGAAATCTCTCCACTGGCCT
NONE
Target Sequence 
TGCATCCCGTGCTTGGCCAATTTATCAACTGGACGTGAAGAACGCATTTGTTCATGATGGAGATCGTATTACCTATCTTT
TGCTGTACATCAACGATATCATCCTCACTGCTTCGACCACATCACTACTTCAGCAGCTTACAGCACGCCTCCACTCCGAG
TTCGCCATGACAGACCTTGGTGACCNNNACTTCTTCCTCGGCATCTCCGTGACGCGCTCCTCTGCCGGCCTCTTACTCTC
GCAACGCCAGTACGTTGTGGATCTTCTTCAGCGGACCGGCATGGCCGAGTGCCACTCTACCTCGACACCAGTCGACACTC
GTGCCAAGCTCTCCGCCATAGACGGCATGCCCGTCGCCCACCCTTCGGAGTACAGGAGCATCGCTGGTGTTCTACAGTAC
CTCACGTTGACTCGACCGGATTTGGCATACGTCGTTCAGCAGGTCTGCCTCTTCATGCATGATCNGCGGAAGACTTGGTC
AAGCGTATCCTCCGGTACGTTAAGGGAAATCTCTCCACTGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis