Browse Element(s) Details


OsAffx.20351.1.S1_x_at

Description tigr:9638.m02346
TID=OsAffx.20351.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2735011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27310NANA10+14077902..14078132hypothetical protein
LOC_Os10g27320OsAffx.8130.1.S1_at11/1110+14089882..14090787hypothetical protein
LOC_Os10g27330OsAffx.30560.1.S1_x_at11/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.3584.1.S1_x_at4/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.30743.1.S1_x_at1/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27340Os.18412.1.S1_a_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.1.S1_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.2.S1_x_at10/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27350OsAffx.20351.1.S1_x_at11/1110+14103018..14103776hypothetical protein
LOC_Os10g27360Os.46817.1.S1_at10/1110+14105439..14107400No apical meristem protein, expressed
LOC_Os10g27370Os.25070.1.A1_at11/1110+14109835..14111457transposon protein, putative, Pong sub-class, expressed
LOC_Os10g27380Os.46798.2.S1_x_at11/1110+14112352..14114069expressed protein
LOC_Os10g27380Os.46798.1.S1_at11/1110+14112352..14114069expressed protein
LOC_Os10g27390OsAffx.18422.1.S1_at11/1110+14115274..14117178No apical meristem protein
LOC_Os10g27400OsAffx.20350.1.S1_x_at11/1110+14118285..14118815hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20351.1.S1_x_at--353--8531Chr10:14103550..14103574 (25 bp)
TCCAGGGCGGCCACGTAGGGCTCCT
LOC_Os10g27350
OsAffx.20351.1.S1_x_at--637--8351Chr10:14103405..14103429 (25 bp)
GGCGGCGTTGTCCTCGGCGCAGACC
LOC_Os10g27350
OsAffx.20351.1.S1_x_at--716--7591Chr10:14103337..14103361 (25 bp)
GGGTGAGGTTCCACCTCCCGGAGCA
LOC_Os10g27350
OsAffx.20351.1.S1_x_at--735--1712Chr09:822405..822429 (25 bp)
ACCACCAGTCGGCTCCCGTGAAGGT
NONE
OsAffx.20351.1.S1_x_at--898--1112Chr09:822411..822431 (21 bp)
AGTCGGCTCCCGTGAAGGTGCCCGT
NONE
OsAffx.20351.1.S1_x_at--445--971Chr10:14103245..14103269 (25 bp)
AGGAGCGGGTGGGACCATCTGGCCG
LOC_Os10g27350
OsAffx.20351.1.S1_x_at--895--8451Chr10:14103226..14103250 (25 bp)
TGGCCGGCGTGCCAGGCGACGGATA
LOC_Os10g27350
OsAffx.20351.1.S1_x_at--1066--9191Chr10:14103217..14103241 (25 bp)
TGCCAGGCGACGGATACGACGACGA
LOC_Os10g27350
OsAffx.20351.1.S1_x_at--570--9111Chr10:14103157..14103181 (25 bp)
TGCTGCCCCCGCACGAGATGGTGGC
LOC_Os10g27350
OsAffx.20351.1.S1_x_at--786--3971Chr10:14103100..14103124 (25 bp)
CGGTGAAGCCGTCCTCGATGCTCGA
LOC_Os10g27350
OsAffx.20351.1.S1_x_at--293--2671Chr10:14103095..14103119 (25 bp)
AAGCCGTCCTCGATGCTCGAGGGCG
LOC_Os10g27350
Target Sequence 
TCCAGGGCGGCCACGTAGGGCTCCTCGCCGCGCTTCACGAGGGGGACAGGAAGCTCTCCGGGCGCGGCGGCGCTGCTGCC
GTGGCCACCGCCGGCGCCGCCGGGGCGCTGCTCCGCCGCAAGGCGACCATCGCCGCCGCGGAGGCGGCGGCGTTGTCCTC
GGCGCAGACCCAGTCGCCCCCGTCCGCCGCGCGCGCGATCCCATCGGCCCCCAGGGTGAGGTTCCACCTCCCGGAGCAGC
CCCCCGCGGTGCCGTACCACCAGTCGGCTCCCGTGAAGGTGCCCGTCCGGCCGCCGCCGCCGCGGAGGAGCGGGTGGGAC
CATCTGGCCGGCGTGCCAGGCGACGGATACGACGACGACGACGACGAGGAGCTCCTCCGTGGGGACGCCGCTATGCTGCC
CCCGCACGAGATGGTGGCGCGCGCGTCCGCCGGCGGCGGCTTCGGCGGGCCGGTGAAGCCGTCCTCGATGCTCGAGGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20351.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis