Browse Element(s) Details


OsAffx.20358.1.S1_at

Description tigr:9638.m02264
TID=OsAffx.20358.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2653011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26500OsAffx.18415.1.S1_x_at11/1110+13473516..13474789HAHB-1, putative
LOC_Os10g26510OsAffx.6772.1.S1_at11/1110+13480599..13482092hypothetical protein
LOC_Os10g26510Os.16463.1.S1_at2/1110+13480599..13482092hypothetical protein
LOC_Os10g26520Os.15059.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26520Os.18446.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26530OsAffx.20358.1.S1_at11/1110+13499491..13500190hypothetical protein
LOC_Os10g26540OsAffx.6774.1.S1_x_at11/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.2.S1_at11/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.1.S1_at8/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.2.S1_x_at4/1110+13501910..13504824expressed protein
LOC_Os10g26550NANA10+13509293..13509829hypothetical protein
LOC_Os10g26560OsAffx.20357.1.S1_at11/1110+13511726..13517239expressed protein
LOC_Os10g26570Os.17997.1.S1_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed
LOC_Os10g26570Os.17997.2.S1_x_at11/1110+13517550..13521947Phosphofructokinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20358.1.S1_at--1128--5331Chr10:13500040..13500064 (25 bp)
GAAGTTCTGGGAGTCAGCTTGGCTC
LOC_Os10g26530
OsAffx.20358.1.S1_at--600--5312Chr10:13500001..13500025 (25 bp)
GAAGGATGTCGCACCACTAGTCCAC
LOC_Os10g26530
OsAffx.20358.1.S1_at--192--2031Chr10:13499986..13500010 (25 bp)
ACTAGTCCACTTGGCCTCTAGGAAA
LOC_Os10g26530
OsAffx.20358.1.S1_at--717--5831Chr10:13499913..13499937 (25 bp)
GACCTTGCTCTACCAACTAACGAAG
LOC_Os10g26530
OsAffx.20358.1.S1_at--545--1932Chr10:13499880..13499904 (25 bp)
ACGGATCTGATTGACCAGCTCATCA
LOC_Os10g26530
OsAffx.20358.1.S1_at--1088--1652Chr10:13499847..13499871 (25 bp)
AGCGCCGTTCGGAATGTACACTTCA
LOC_Os10g26530
OsAffx.20358.1.S1_at--566--8411Chr10:13499770..13499794 (25 bp)
GGCCGCCTCAGCTTATAAGGTGCAA
LOC_Os10g26530
OsAffx.20358.1.S1_at--551--7771Chr10:13499752..13499776 (25 bp)
GGTGCAACTCCTGGGTACAACATTG
LOC_Os10g26530
OsAffx.20358.1.S1_at--250--10111Chr10:13499708..13499732 (25 bp)
TATGGAGGCCTTGGGCACCGCACAA
LOC_Os10g26530
OsAffx.20358.1.S1_at--335--10292Chr10:13499673..13499697 (25 bp)
TTTGCCTGGCTGATACTCCAAAACA
LOC_Os10g26530
OsAffx.20358.1.S1_at--297--571Chr10:13499596..13499620 (25 bp)
ATGCCCTTTATATCGCCAGACTCAA
LOC_Os10g26530
Target Sequence 
GAAGTTCTGGGAGTCAGCTTGGCTCCAAGAGAGAAGATTGAAGGATGTCGCACCACTAGTCCACTTGGCCTCTAGGAAAA
AGAGCAGGACCCTCAAACATGCCGCTTTAGCAGATCAATGGCTGCACGACCTTGCTCTACCAACTAACGAAGGATGGACA
ACGGATCTGATTGACCAGCTCATCACCGTTTGGAGCGCCGTTCGGAATGTACACTTCACGGAACATGAAGATCAGATCAC
ATGGAAGCTCAACAACCATGGTGAATACACGGCCGCCTCAGCTTATAAGGTGCAACTCCTGGGTACAACATTGTCAAATT
TCGACACATTGATATGGAGGCCTTGGGCACCGCACAAGTGCAAGACCTTTGCCTGGCTGATACTCCAAAACAGAGTGTGG
ACATCAGACAGACTAGCAACCAGAGGCTTGCCCAACGGATCCACATGCCCTTTATATCGCCAGACTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20358.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis