Browse Element(s) Details


OsAffx.20377.1.S1_at

Description tigr:9638.m02169
TID=OsAffx.20377.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative no apical meristem (NAM) protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2562011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25570Os.46685.1.S1_x_at11/1110+12926844..12927884expressed protein
LOC_Os10g25570Os.52427.1.S1_at8/1110+12926844..12927884expressed protein
LOC_Os10g25580OsAffx.20379.1.S1_at11/1110+12929937..12930182hypothetical protein
LOC_Os10g25590Os.46684.1.S1_at5/1110+12932478..12934134Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g25600Os.40386.1.S1_at11/1110+12934316..12938057expressed protein
LOC_Os10g25600Os.17912.1.A1_at5/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_s_at2/1110+12934316..12938057expressed protein
LOC_Os10g25600OsAffx.23357.2.S1_at1/1110+12934316..12938057expressed protein
LOC_Os10g25620OsAffx.20377.1.S1_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620OsAffx.20377.1.S1_x_at11/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25620Os.17912.2.S1_x_at2/1110+12939360..12941518No apical meristem protein, expressed
LOC_Os10g25630OsAffx.18408.1.S1_at4/1110+12946408..12947550expressed protein
LOC_Os10g25630OsAffx.20377.1.S1_x_at1/1110+12946408..12947550expressed protein
LOC_Os10g25640NANA10+12947923..12949291No apical meristem protein
LOC_Os10g25660Os.46558.1.S1_at11/1110+12952831..12954237F-box domain containing protein, expressed
LOC_Os10g25670OsAffx.30530.1.S1_at11/1110+12956446..12957159expressed protein
LOC_Os10g25674Os.25167.1.S1_a_at11/1110+12958228..12960795Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os10g25680Os.25167.2.S1_at9/1110+12962948..12972003F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009744biological_processresponse to sucrose stimulus
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20377.1.S1_at--202--1511Chr10:12939649..12939673 (25 bp)
AGCACGAGCATCAGTATCACCCACA
LOC_Os10g25620
OsAffx.20377.1.S1_at--620--1871Chr10:12939646..12939670 (25 bp)
ACGAGCATCAGTATCACCCACAGGA
LOC_Os10g25620
OsAffx.20377.1.S1_at--580--5931Chr10:12939644..12939668 (25 bp)
GAGCATCAGTATCACCCACAGGAGC
LOC_Os10g25620
OsAffx.20377.1.S1_at--14--411Chr10:12939640..12939664 (25 bp)
ATCAGTATCACCCACAGGAGCCGCA
LOC_Os10g25620
OsAffx.20377.1.S1_at--937--1191Chr10:12939637..12939661 (25 bp)
AGTATCACCCACAGGAGCCGCAGGC
LOC_Os10g25620
OsAffx.20377.1.S1_at--617--3311Chr10:12939628..12939652 (25 bp)
CACAGGAGCCGCAGGCATCGCTGGT
LOC_Os10g25620
OsAffx.20377.1.S1_at--548--8091Chr10:12939624..12939648 (25 bp)
GGAGCCGCAGGCATCGCTGGTGGAT
LOC_Os10g25620
OsAffx.20377.1.S1_at--705--5331Chr10:12939446..12939470 (25 bp)
GAAGTCTTTCCTGACAATGATGAGG
LOC_Os10g25620
OsAffx.20377.1.S1_at--209--7151Chr10:12939443..12939467 (25 bp)
GTCTTTCCTGACAATGATGAGGTGG
LOC_Os10g25620
OsAffx.20377.1.S1_at--958--10631Chr10:12939439..12939463 (25 bp)
TTCCTGACAATGATGAGGTGGTGGC
LOC_Os10g25620
OsAffx.20377.1.S1_at--353--6291Chr10:12939408..12939432 (25 bp)
GATGATGATCGACGGTGGTAGGGAT
LOC_Os10g25620
Target Sequence 
AGCACGAGCATCAGTATCACCCACAGGAGCCGCAGGCATCGCTGGTGGATGCCGAGGACGGCTACAGCGCCATGGCCGGT
GGCGACGACGCGCAGCTGGGCGGCGCGGAGCTTGACACCGAACGAATCGCCGAAATGGTAAACCATATAATGGATGGCGA
ATTCGAGTTCAAATTCGAGGACAACACCGTCCTTAAGTACAACGAAGTCTTTCCTGACAATGATGAGGTGGTGGCGGCGC
CGATGATGATCGACGGTGGTAGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis