Browse Element(s) Details


OsAffx.20439.1.S1_at

Description tigr:9638.m01880
TID=OsAffx.20439.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative disease resistance gene
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2230011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22230NANA10+11174458..11175845Zinc knuckle family protein
LOC_Os10g22240NANA10+11178521..11181474retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22250OsAffx.22722.1.S1_x_at1/1110+11181967..11184492retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22260OsAffx.20440.1.S1_at11/1110+11186035..11188953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22260OsAffx.20440.1.S1_x_at11/1110+11186035..11188953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22260OsAffx.20440.2.S1_x_at3/1110+11186035..11188953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g22270OsAffx.18344.1.S1_at11/1110+11191642..11191958hypothetical protein
LOC_Os10g22290OsAffx.30497.1.S1_at10/1110+11194428..11196644hypothetical protein
LOC_Os10g22290Os.41248.5.S1_x_at5/1110+11194428..11196644hypothetical protein
LOC_Os10g22290Os.41248.2.A1_at2/1110+11194428..11196644hypothetical protein
LOC_Os10g22300OsAffx.20439.1.S1_at11/1110+11197659..11204011NB-ARC domain containing protein, expressed
LOC_Os10g22310Os.46885.2.S1_x_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.1.S1_x_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.1.S1_at11/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22310Os.46885.2.S1_at10/1110+11206257..11207568glutathione transferase, putative, expressed
LOC_Os10g22320NANA10+11208808..11209218hypothetical protein
LOC_Os10g22330Os.7061.1.S1_at10/1110+11211712..11214648Adapter-related protein complex 4 sigma 1 subunit, putative, expressed
LOC_Os10g22340OsAffx.228.1.S1_at10/1110+11217009..11218485transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g22350OsAffx.30498.1.S1_at11/1110+11223878..11229788hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20439.1.S1_at--841--191Chr10:11203427..11203451 (25 bp)
ATTTCCCTTTCAAGTGCCATTCAGA
LOC_Os10g22300
OsAffx.20439.1.S1_at--179--6371Chr10:11203472..11203496 (25 bp)
GATCCAAATGATGCGCGTTCTCTGT
LOC_Os10g22300
OsAffx.20439.1.S1_at--516--551Chr10:11203526..11203550 (25 bp)
ATCCTGCAAATTTCTCCTCGAGGAG
LOC_Os10g22300
OsAffx.20439.1.S1_at--824--8031Chr10:11203547..11203571 (25 bp)
GGAGATTGCAACCTTAGGTCCCTGA
LOC_Os10g22300
OsAffx.20439.1.S1_at--800--10071Chr10:11203561..11203585 (25 bp)
TAGGTCCCTGAAACTCTACGGCGAA
LOC_Os10g22300
OsAffx.20439.1.S1_at--469--2831Chr10:11203601..11203625 (25 bp)
AAGTTTTTCGCTTCGCTATTAGCTC
LOC_Os10g22300
OsAffx.20439.1.S1_at--573--9971Chr10:11203637..11203661 (25 bp)
TACCTTTCATCAACTACTATCCGAG
LOC_Os10g22300
OsAffx.20439.1.S1_at--315--6271Chr10:11203664..11203688 (25 bp)
GATGTCCTAACAGCCCTGAGTGAGT
LOC_Os10g22300
OsAffx.20439.1.S1_at--489--8291Chr10:11203773..11203797 (25 bp)
GGCTATGCTTTGTGATTCAACGTCT
LOC_Os10g22300
OsAffx.20439.1.S1_at--269--10511Chr10:11203788..11203812 (25 bp)
TTCAACGTCTGACTCTTCCTGGAAT
LOC_Os10g22300
OsAffx.20439.1.S1_at--222--8731Chr10:11203837..11203861 (25 bp)
TGTCTCCCTCCAATTGATCTATGAA
LOC_Os10g22300
Target Sequence 
ATTTCCCTTTCAAGTGCCATTCAGAAGTTCATAGAGAACGGCAATGATCCAAATGATGCGCGTTCTCTGTCAGTGGATTT
CAGTGAATGCTCCGAAGACATCCTGCAAATTTCTCCTCGAGGAGATTGCAACCTTAGGTCCCTGAAACTCTACGGCGAAC
TGCAAAAAATCCCCAAGTTTTTCGCTTCGCTATTAGCTCTCAGAGAATTGTACCTTTCATCAACTACTATCCGAGGGGAT
GTCCTAACAGCCCTGAGTGAGTTAAGATACTTGGTTTATCTCAAACTTATCGCAGAAAACCTTGAGGATTTTATGATAAA
ATATGGGGCATTCCAAAGCCTGCAAAGGCTATGCTTTGTGATTCAACGTCTGACTCTTCCTGGAATCCAGGAGGGAGCTC
TGCCACAGCTTGTCTCCCTCCAATTGATCTATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20439.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis