Browse Element(s) Details


OsAffx.20451.1.S1_at

Description gb:NM_196039.1
DB_XREF= gi:37533437
TID=OsAffx.20451.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0058E19.3), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g224501/11hypothetical protein
LOC_Os01g274501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22430NANA11+12395546..12402572retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22440NANA11+12406105..12408681retrotransposon protein, putative, unclassified
LOC_Os11g22450OsAffx.20451.1.S1_at1/1111+12420245..12420869hypothetical protein
LOC_Os11g22460NANA11+12426563..12427120hypothetical protein
LOC_Os11g22470OsAffx.17095.1.S1_at10/1111+12439334..12440720hypothetical protein
LOC_Os11g22470OsAffx.26043.1.S1_x_at2/1111+12439334..12440720hypothetical protein
LOC_Os11g22470OsAffx.26043.1.S1_at2/1111+12439334..12440720hypothetical protein
LOC_Os11g22470OsAffx.7645.1.S1_at1/1111+12439334..12440720hypothetical protein
LOC_Os11g22480OsAffx.31090.1.S1_at11/1111+12441685..12444042hypothetical protein
LOC_Os11g22480OsAffx.26058.1.S1_at2/1111+12441685..12444042hypothetical protein
LOC_Os11g22480OsAffx.23458.1.S1_x_at1/1111+12441685..12444042hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20451.1.S1_at--1083--654Chr08:7360672..7360696 (25 bp)
ATGAAGTCCCTGTTTCTTCTCCATT
NONE
OsAffx.20451.1.S1_at--501--10591Chr10:10846098..10846122 (25 bp)
TTCTCCATTCGATAAGCAGCAAAGC
NONE
OsAffx.20451.1.S1_at--424--2171Chr10:10846038..10846058 (21 bp)
ACAAATGGTGACTCCGTTGGGCGGA
NONE
OsAffx.20451.1.S1_at--657--7511Chr10:10845896..10845920 (25 bp)
GTGGTTGTGCATGTCGTGCTATAGA
NONE
OsAffx.20451.1.S1_at--994--9411Chr10:10845883..10845907 (25 bp)
TCGTGCTATAGACTGGATGTACCCA
NONE
OsAffx.20451.1.S1_at--21--6995Chr11:12131727..12131749 (23 bp)
GTACCCAAAGGGATGCATGCATGGT
NONE
OsAffx.20451.1.S1_at--681--9051Chr10:10845828..10845872 (25 bp)
TGCATGGTACTCACCGAAGCTCGGA
NONE
OsAffx.20451.1.S1_at--483--1331Chr10:10845499..10845791 (25 bp)
AGAGGATGTCCCGTCAGCGTTATAT
NONE
OsAffx.20451.1.S1_at--127--7111Chr10:10845487..10845779 (25 bp)
GTCAGCGTTATATTTGCTCCACAGC
NONE
OsAffx.20451.1.S1_at--637--3411Chr10:10845466..10845490 (25 bp)
CAGCAACCGGAATCGGCGACGAGAT
NONE
OsAffx.20451.1.S1_at--399--10656Chr10:7545695..7545716 (22 bp)
TTCCCACCAAACCACTGCATGATAG
NONE
Target Sequence 
ATGAAGTCCCTGTTTCTTCTCCATTCGATAAGCAGCAAAGCAGCCATGGGCCTCTGGCCCTCTGCTCGCCGGTGTCGGCG
ACAAATGGTGACTCCGTTGGGCGGACATCGGAGTAGCGCCAGCGGTGAGTCCGAGCAGAGGATGTTTTCGGGTGGTTGTG
CATGTCGTGCTATAGACTGGATGTACCCAAAGGGATGCATGCATGGTACTCACCGAAGCTCGGACGAGGTACGGGTAGGC
CTGGACAGCGACGACGATGCAGAGGATGTCCCGTCAGCGTTATATTTGCTCCACAGCAACCGGAATCGGCGACGAGATCT
CGTGGCGGCGGTGCACTGTGTGCGCTCCGGAGCTCCCGCGGGCGAGGTCGCGTTCCCACCAAACCACTGCATGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis