Browse Element(s) Details


OsAffx.20509.1.S1_at

Description gb:NM_195813.1
DB_XREF= gi:37532985
TID=OsAffx.20509.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1325D05.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g143402/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14300Os.18747.1.S1_at11/1111+8013867..8022134La domain-containing protein, putative, expressed
LOC_Os11g14310OsAffx.18845.1.S1_at11/1111+8028280..8028558hypothetical protein
LOC_Os11g14320Os.48823.1.A1_at1/1111+8030712..8032688hypothetical protein
LOC_Os11g14330OsAffx.31892.2.S1_x_at1/1111+8034361..8041580retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14340Os.10731.1.A1_a_at11/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340Os.48015.1.A1_at5/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.3613.1.S1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340Os.48015.1.A1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.31869.5.S1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.3613.1.S1_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.27522.1.S1_x_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.20509.1.S1_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350Os.14491.2.S1_x_at3/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350Os.47463.1.S1_x_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350OsAffx.20057.1.S1_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14360OsAffx.7107.1.S1_at11/1111+8058529..8060562Zinc knuckle family protein
LOC_Os11g14370OsAffx.20973.1.S1_at1/1111+8064348..8066349hypothetical protein
LOC_Os11g14380Os.48915.1.S1_at10/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14380Os.55130.1.S1_at1/1111+8067905..8073534NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20509.1.S1_at--217--5132Chr10:9330544..9330568 (25 bp)
GCACAACGGCGGTCTTCTCGAGCGA
NONE
OsAffx.20509.1.S1_at--165--5754Chr10:9330573..9330597 (25 bp)
GACGGCTAGAGCGACGGCGGCTCAC
NONE
OsAffx.20509.1.S1_at--917--3212Chr10:9330617..9330641 (25 bp)
CAAGGGTGCACGACGCTAGGGCTCT
NONE
OsAffx.20509.1.S1_at--73--6713Chr11:8046635..8046777 (25 bp)
GTTCCTGGCCTAGGTCAATCTCCAA
LOC_Os11g14340
OsAffx.20509.1.S1_at--449--8455Chr11:8046640..8046782 (25 bp)
TGGCCTAGGTCAATCTCCAAAGAAC
LOC_Os11g14340
OsAffx.20509.1.S1_at--721--3111Chr10:9331205..9331229 (25 bp)
AATTTGGGATGGGTTACGGACATGT
NONE
OsAffx.20509.1.S1_at--206--81312Chr11:14629915..14629934 (20 bp)
GGACATGTGAACGTAGTCTTACTCT
NONE
OsAffx.20509.1.S1_at--906--6938Chr10:9331234..9331258 (25 bp)
GTAGTCTTACTCTGGTCCTCCGGAT
NONE
OsAffx.20509.1.S1_at--147--9458Chr11:14629937..14629961 (25 bp)
TCTGGTCCTCCGGATGGATGGGAAT
NONE
OsAffx.20509.1.S1_at--688--6492Chr10:9331274..9331298 (25 bp)
GATATCCGGAATATCCATCAAGGAA
NONE
OsAffx.20509.1.S1_at--224--2498Chr10:9331298..9331322 (25 bp)
AACAGAAGAAGGAATGATTTGCCAG
NONE
Target Sequence 
GCACAACGGCGGTCTTCTCGAGCGACGGCGACGGCTAGAGCGACGGCGGCTCACGGCTGGAGCGACGGCGGCGCAAGGGT
GCACGACGCTAGGGCTCTTCCGGCGACGAGAGGCGAAGGCGAGGGTGGCGGCGGGCATGGTGCGCATGTCTGGTGTAGAC
CGGGAGTGGTTACACAGCATGGCACATGCGCTGGCACTGGACACATGGACGTGGCCAAGAGAGGACGTTCCTGGCCTAGG
TCAATCTCCAAAGAACTCCAGGGTTAAGCGTGCTTGGCCTGGAGCAATTTGGGATGGGTTACGGACATGTGAACGTAGTC
TTACTCTGGTCCTCCGGATGGATGGGAATTTGATGATATCCGGAATATCCATCAAGGAAACAGAAGAAGGAATGATTTGC
CAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis