Browse Element(s) Details


OsAffx.2056.1.S1_at

Description tigr:9629.m02100
TID=OsAffx.2056.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2193011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21880NANA1+12262627..12263007expressed protein
LOC_Os01g21890OsAffx.2054.2.S1_at11/111+12265391..12273250NA
LOC_Os01g21890OsAffx.2054.2.S1_x_at11/111+12265391..12273250NA
LOC_Os01g21890OsAffx.23347.2.S1_x_at5/111+12265391..12273250NA
LOC_Os01g21890OsAffx.23347.2.S1_at4/111+12265391..12273250NA
LOC_Os01g21900NANA1+12274415..12274876Soluble inorganic pyrophosphatase, putative
LOC_Os01g21909OsAffx.30564.2.S1_s_at1/111+12277188..12277481hypothetical protein
LOC_Os01g21920OsAffx.11153.1.S1_at11/111+12279711..12280670hypothetical protein
LOC_Os01g21930OsAffx.2056.1.S1_at11/111+12282133..12282462hypothetical protein
LOC_Os01g21940Os.1113.1.S1_at11/111+12285670..12291916Will die slowly protein, putative, expressed
LOC_Os01g21940Os.38429.1.S1_at1/111+12285670..12291916Will die slowly protein, putative, expressed
LOC_Os01g21950NANA1+12299256..12299742hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2056.1.S1_at--538--1972Chr05:14530796..14530816 (21 bp)
ACTGCCGAGGAAGACTCCTTCGACG
NONE
OsAffx.2056.1.S1_at--790--4491Chr01:12282373..12282397 (25 bp)
GCCGAGGAAGACTCCTTCGACGTTG
LOC_Os01g21930
OsAffx.2056.1.S1_at--522--6192Chr05:14530795..14530814 (20 bp)
GAGGAAGACTCCTTCGACGTTGCCC
NONE
OsAffx.2056.1.S1_at--545--4591Chr01:12282310..12282334 (25 bp)
GCGAAAGCTTCCAGGCGTCGGCGTC
LOC_Os01g21930
OsAffx.2056.1.S1_at--960--8351Chr01:12282291..12282315 (25 bp)
GGCGTCCTCGACAATGACGGCTTCT
LOC_Os01g21930
OsAffx.2056.1.S1_at--64--9271Chr01:12282287..12282311 (25 bp)
TCCTCGACAATGACGGCTTCTACGG
LOC_Os01g21930
OsAffx.2056.1.S1_at--767--9351Chr01:12282284..12282308 (25 bp)
TCGACAATGACGGCTTCTACGGCGG
LOC_Os01g21930
OsAffx.2056.1.S1_at--221--9452Chr05:14530644..14530668 (25 bp)
TCGGAGGAATGCCAAGAGCCGCACA
NONE
OsAffx.2056.1.S1_at--774--6192Chr05:14530641..14530665 (25 bp)
GAGGAATGCCAAGAGCCGCACAAAA
NONE
OsAffx.2056.1.S1_at--735--8192Chr05:14530639..14530663 (25 bp)
GGAATGCCAAGAGCCGCACAAAAAC
NONE
OsAffx.2056.1.S1_at--1106--9192Chr05:14530639..14530659 (21 bp)
TGCCAAGAGCCGCACAAAAACGGGC
NONE
Target Sequence 
ACTGCCGAGGAAGACTCCTTCGACGTTGCCCTCCTCTCCAGCCCTCGGCCCCATGTCCTCCCCCACGCGAAAGCTTCCAG
GCGTCGGCGTCCTCGACAATGACGGCTTCTACGGCGGCGGCGGCGGCGGCGGCGCCAAGCTCTTCTTCACCACCACCCAC
GTCGGAGGAATGCCAAGAGCCGCACAAAAACGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis