Browse Element(s) Details


Os.1113.1.S1_at

Description gb:AK121409.1
DB_XREF= gi:37991032
TID=Os.1113.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0426D06.17 (P0426D06.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132M16, full insert sequence.
FL= gb:AK121409.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2194011/11Will die slowly protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21880NANA1+12262627..12263007expressed protein
LOC_Os01g21890OsAffx.2054.2.S1_at11/111+12265391..12273250NA
LOC_Os01g21890OsAffx.2054.2.S1_x_at11/111+12265391..12273250NA
LOC_Os01g21890OsAffx.23347.2.S1_x_at5/111+12265391..12273250NA
LOC_Os01g21890OsAffx.23347.2.S1_at4/111+12265391..12273250NA
LOC_Os01g21900NANA1+12274415..12274876Soluble inorganic pyrophosphatase, putative
LOC_Os01g21909OsAffx.30564.2.S1_s_at1/111+12277188..12277481hypothetical protein
LOC_Os01g21920OsAffx.11153.1.S1_at11/111+12279711..12280670hypothetical protein
LOC_Os01g21930OsAffx.2056.1.S1_at11/111+12282133..12282462hypothetical protein
LOC_Os01g21940Os.1113.1.S1_at11/111+12285670..12291916Will die slowly protein, putative, expressed
LOC_Os01g21940Os.38429.1.S1_at1/111+12285670..12291916Will die slowly protein, putative, expressed
LOC_Os01g21950NANA1+12299256..12299742hypothetical protein
LOC_Os01g21960Os.8963.1.S1_at10/111+12309027..12314227Protein kinase domain containing protein, expressed
LOC_Os01g21970Os.9394.1.S1_at11/111+12315276..12319708Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0030126cellular_componentCOPI vesicle coat
GO:0000166molecular_functionnucleotide binding
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1113.1.S1_at--498--10731Chr01:12286403..12286427 (25 bp)
TTGCAGCTTCCGTTTCACCAAAAGG
LOC_Os01g21940
Os.1113.1.S1_at--290--10231Chr01:12286254..12286278 (25 bp)
TATTGCTTTAGCTACCAGTCCGGTA
LOC_Os01g21940
Os.1113.1.S1_at--415--5931Chr01:12286107..12286248 (25 bp)
GAGCATCTAATGAAGGTCCACGACA
LOC_Os01g21940
Os.1113.1.S1_at--1132--8151Chr01:12286049..12286073 (25 bp)
GGAACTTGATTGCTACTTATGCTGA
LOC_Os01g21940
Os.1113.1.S1_at--107--4451Chr01:12286000..12286024 (25 bp)
GCCTTGATTATTTGTAACTTGCCTT
LOC_Os01g21940
Os.1113.1.S1_at--71--2071Chr01:12285984..12286008 (25 bp)
ACTTGCCTTTGTTCTTATCTTGTAA
LOC_Os01g21940
Os.1113.1.S1_at--1097--6531Chr01:12285946..12285970 (25 bp)
GATTATCCATCTCTGTTCTAAGTGC
LOC_Os01g21940
Os.1113.1.S1_at--475--7631Chr01:12285878..12285902 (25 bp)
GGGAGGTGACCTTACTAGCTAACAT
LOC_Os01g21940
Os.1113.1.S1_at--469--10011Chr01:12285863..12285887 (25 bp)
TAGCTAACATTATCTTCCCTGGTGC
LOC_Os01g21940
Os.1113.1.S1_at--103--8551Chr01:12285835..12285859 (25 bp)
TGGAGCCCAGTGTATTCCCATTGTA
LOC_Os01g21940
Os.1113.1.S1_at--539--5931Chr01:12285750..12285774 (25 bp)
GAGCATGATTCCTTTTGTCGCGGAC
LOC_Os01g21940
Target Sequence 
TTGCAGCTTCCGTTTCACCAAAAGGAGAATGGATATATTGTGTTGGTGAAGACATGAACATGTATTGCTTTAGCTACCAG
TCCGGTAAACTGGAGCATCTAATGAAGGTCCACGACAAGGATGTGATAGGCATCACTCACCACCCTCATAGGAACTTGAT
TGCTACTTATGCTGAAGATTGCACGATGAAAACATGGAAGCCTTGATTATTTGTAACTTGCCTTTGTTCTTATCTTGTAA
TTGTAGGAAGCATGATTATCCATCTCTGTTCTAAGTGCTAGATAAATAGGATCTATTTTGATTTTTGTAATTTAGAGAAC
TGGGAGGTGACCTTACTAGCTAACATTATCTTCCCTGGTGCTTCTGGAGCCCAGTGTATTCCCATTGTATCTTATATTAT
ATAGCATTAGTAGGTATCATTGTATNGAGGAAACAAAATTAGGTGAGGTGAGCATGATTCCTTTTGTCGCGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis