Browse Element(s) Details


Os.9394.1.S1_at

Description gb:AU108281
DB_XREF= gi:10611410
DB_XREF=AU108281
CLONE=E0812
TID=Os.9394.1
CNT=26
FEA=FLmRNA
TIER=Stack
STK=8
UG=Os.9394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative Pto kinase interactor 1 (P0426D06.21), mRNA
FL= gb:AK065231.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2197011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21940Os.1113.1.S1_at11/111+12285670..12291916Will die slowly protein, putative, expressed
LOC_Os01g21940Os.38429.1.S1_at1/111+12285670..12291916Will die slowly protein, putative, expressed
LOC_Os01g21950NANA1+12299256..12299742hypothetical protein
LOC_Os01g21960Os.8963.1.S1_at10/111+12309027..12314227Protein kinase domain containing protein, expressed
LOC_Os01g21970Os.9394.1.S1_at11/111+12315276..12319708Protein kinase domain containing protein, expressed
LOC_Os01g21980OsAffx.11154.1.S1_x_at11/111+12322270..12322705hypothetical protein
LOC_Os01g21980OsAffx.11154.2.S1_s_at11/111+12322270..12322705hypothetical protein
LOC_Os01g21990Os.23135.1.A1_at11/111+12326941..12333707CRS2-associated factor 2, putative, expressed
LOC_Os01g22000Os.31286.1.S1_at10/111+12334153..12335544expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9394.1.S1_at--189--10491Chr01:12316450..12316474 (25 bp)
TTAACTGGTCGCAAACCGGTCGATC
LOC_Os01g21970
Os.9394.1.S1_at--390--7371Chr01:12316299..12316420 (25 bp)
GTGACATGGGCTACTCCAAGGCTAA
LOC_Os01g21970
Os.9394.1.S1_at--973--9131Chr01:12315719..12315743 (25 bp)
TGCGTGCAGTACGAGGCGGACTTCA
LOC_Os01g21970
Os.9394.1.S1_at--781--4611Chr01:12315607..12315631 (25 bp)
GCGAGCGATCCGGATTATGAGCACG
LOC_Os01g21970
Os.9394.1.S1_at--111--10131Chr01:12315592..12315616 (25 bp)
TATGAGCACGCCATGACCATTTTTC
LOC_Os01g21970
Os.9394.1.S1_at--992--2931Chr01:12315531..12315555 (25 bp)
AAGGCTCGGTTTCCATGGATTCCAA
LOC_Os01g21970
Os.9394.1.S1_at--1123--5351Chr01:12315483..12315507 (25 bp)
GAAGAGGGTAGCTCTGCTGCTGCCT
LOC_Os01g21970
Os.9394.1.S1_at--281--9591Chr01:12315457..12315481 (25 bp)
TCTTGTTCTTGCCTCGATCTCCAGA
LOC_Os01g21970
Os.9394.1.S1_at--358--471Chr01:12315441..12315465 (25 bp)
ATCTCCAGACTCCTGTTGCTGTAAA
LOC_Os01g21970
Os.9394.1.S1_at--273--8751Chr01:12315422..12315446 (25 bp)
TGTAAATTGTCGCAATCCCTCCTGA
LOC_Os01g21970
Os.9394.1.S1_at--606--8831Chr01:12315400..12315424 (25 bp)
TGATTATGTGTTCCTCTCGACCTCT
LOC_Os01g21970
Target Sequence 
TTAACTGGTCGCAAACCGGTCGATCATACGCTGCCCCGTGGCCAGCAGAGTCTTGTGACATGGGCTACTCCAAGGCTAAG
TGAAGACAAGGTGAAGCAATGCGTGGATCCAAGGCTTGAAGGGGATTATCCTCCCAAGGNCTGTTGCCAAGATGGCTGCC
GTANGCTGCGCTGTGCGTGCAGTACGAGGCGGACTTCAGGCCCAACATGAGCATCGTCGTCAAGGCTCTGAACCCACTCC
TCAACAGCCGCCCGAACAATCGCCCCGCCTCCTTCACCGACGCCGGCGAGCGATCCGGATTATGAGCACGCCATGACCAT
TTTTCTCATCGGACTCCGGTGACACCACGACGACGGGAGGGAAGGCTCGGTTTCCATGGATTCCAAATGTGTAAAAATTC
AGTGGAAATGAAGAGGGTAGCTCTGCTGCTGCCTGTCTTGTTCTTGCCTCGATCTCCAGACTCCTGTTGCTGTAAATTGT
CGCAATCCCTCCTGATTATGTGTTCCTCTCGACCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9394.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis