Browse Element(s) Details


OsAffx.11154.1.S1_x_at

Description gb:NM_183792.1
DB_XREF= gi:34894711
GEN=P0426D06.22
TID=OsAffx.11154.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0426D06.22 (P0426D06.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2198011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21950NANA1+12299256..12299742hypothetical protein
LOC_Os01g21960Os.8963.1.S1_at10/111+12309027..12314227Protein kinase domain containing protein, expressed
LOC_Os01g21970Os.9394.1.S1_at11/111+12315276..12319708Protein kinase domain containing protein, expressed
LOC_Os01g21980OsAffx.11154.1.S1_x_at11/111+12322270..12322705hypothetical protein
LOC_Os01g21980OsAffx.11154.2.S1_s_at11/111+12322270..12322705hypothetical protein
LOC_Os01g21990Os.23135.1.A1_at11/111+12326941..12333707CRS2-associated factor 2, putative, expressed
LOC_Os01g22000Os.31286.1.S1_at10/111+12334153..12335544expressed protein
LOC_Os01g22010Os.12223.1.S1_at10/111+12346190..12348795S-adenosylmethionine synthetase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11154.1.S1_x_at--764--991Chr01:12322610..12322634 (25 bp)
AGGTTCCAGGGAAGAGGCAATGCAC
LOC_Os01g21980
OsAffx.11154.1.S1_x_at--361--931Chr01:12322596..12322620 (25 bp)
AGGCAATGCACGGAGGGAACCGATA
LOC_Os01g21980
OsAffx.11154.1.S1_x_at--37--8191Chr01:12322467..12322605 (25 bp)
GGAACCGATAGTGGTGTTGTATCAG
LOC_Os01g21980
OsAffx.11154.1.S1_x_at--584--5311Chr01:12322435..12322459 (25 bp)
GAAGGTTCGATGGTGTCAGCTTGTC
LOC_Os01g21980
OsAffx.11154.1.S1_x_at--620--7451Chr01:12322423..12322447 (25 bp)
GTGTCAGCTTGTCGCCAAGGCAGCA
LOC_Os01g21980
OsAffx.11154.1.S1_x_at--592--3212Chr01:16632922..16633352 (25 bp)
CAAGGCAGCAGACGATGACGACTGT
NONE
OsAffx.11154.1.S1_x_at--402--691Chr01:12322394..12322418 (25 bp)
ATGACGACTGTGGTGGTGACTACTT
LOC_Os01g21980
OsAffx.11154.1.S1_x_at--511--5851Chr01:12322360..12322384 (25 bp)
GACCATGGCCATCCTTGAGGCAGAA
LOC_Os01g21980
OsAffx.11154.1.S1_x_at--785--571Chr01:12322350..12322374 (25 bp)
ATCCTTGAGGCAGAAGATGACGAAG
LOC_Os01g21980
OsAffx.11154.1.S1_x_at--285--691Chr01:12322334..12322358 (25 bp)
ATGACGAAGACATGCCTTTGCTGCC
LOC_Os01g21980
OsAffx.11154.1.S1_x_at--858--2751Chr01:12322328..12322352 (25 bp)
AAGACATGCCTTTGCTGCCCGAGAG
LOC_Os01g21980
Target Sequence 
AGGTTCCAGGGAAGAGGCAATGCACGGAGGGAACCGATAGTGGTGTTGTATCAGTGATGGAGAAGGTTCGATGGTGTCAG
CTTGTCGCCAAGGCAGCAGACGATGACGACTGTGGTGGTGACTACTTGGGGACCCCGACCATGGCCATCCTTGAGGCAGA
AGATGACGAAGACATGCCTTTGCTGCCCGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11154.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis