Browse Element(s) Details


Os.12223.1.S1_at

Description gb:U82833.1
DB_XREF= gi:1778820
GEN=pOS-SAMS2
TID=Os.12223.1
CNT=155
FEA=FLmRNA
TIER=FL+Stack
STK=35
UG=Os.12223 (NCBI UniGene Cluster)
DEF=Oryza sativa S-adenosyl-L-methionine synthetase (pOS-SAMS2) mRNA, complete cds.
PROD=S-adenosyl-L-methionine synthetase
FL= gb:AK071516.1 gb:U82833.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2201010/11S-adenosylmethionine synthetase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21980OsAffx.11154.1.S1_x_at11/111+12322270..12322705hypothetical protein
LOC_Os01g21980OsAffx.11154.2.S1_s_at11/111+12322270..12322705hypothetical protein
LOC_Os01g21990Os.23135.1.A1_at11/111+12326941..12333707CRS2-associated factor 2, putative, expressed
LOC_Os01g22000Os.31286.1.S1_at10/111+12334153..12335544expressed protein
LOC_Os01g22010Os.12223.1.S1_at10/111+12346190..12348795S-adenosylmethionine synthetase 2, putative, expressed
LOC_Os01g22030OsAffx.23332.1.S1_at8/111+12354422..12354787hypothetical protein
LOC_Os01g22039OsAffx.23333.1.S1_at11/111+12358077..12360921hypothetical protein
LOC_Os01g22039OsAffx.23333.2.S1_x_at10/111+12358077..12360921hypothetical protein
LOC_Os01g22050Os.46012.2.S1_x_at3/111+12364209..12371647retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22050Os.46012.3.S1_x_at2/111+12364209..12371647retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22050Os.27088.1.A1_x_at2/111+12364209..12371647retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006555biological_processmethionine metabolism
GO:0006556biological_processS-adenosylmethionine biosynthesis
GO:0009693biological_processethylene biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0004478molecular_functionmethionine adenosyltransferase activity
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12223.1.S1_at--1107--4231Chr01:12346888..12346912 (25 bp)
CCGGGATGATGACCATCAACCTCGA
LOC_Os01g22010
Os.12223.1.S1_at--913--2611Chr01:12346847..12346871 (25 bp)
AACCGGTTCATCAAGACCGCGGCGT
LOC_Os01g22010
Os.12223.1.S1_at--839--2731Chr01:12346835..12346859 (25 bp)
AAGACCGCGGCGTACGGCCATTTCG
LOC_Os01g22010
Os.12223.1.S1_at--13--31Chr01:12346816..12346840 (25 bp)
ATTTCGGCCGCGAGGATCCCGACTT
LOC_Os01g22010
Os.12223.1.S1_at--638--9691Chr01:12346792..12346816 (25 bp)
TCACATGGGAGGTTGTCAAGCCGCT
LOC_Os01g22010
Os.12223.1.S1_at--957--6631Chr01:12346781..12346805 (25 bp)
GTTGTCAAGCCGCTCAAGTATGAGA
LOC_Os01g22010
Os.12223.1.S1_at--371--4171Chr01:12346657..12346681 (25 bp)
CGCCTACCTGATGTGTCTTTGATCA
LOC_Os01g22010
Os.12223.1.S1_at--565--3451Chr01:12346634..12346658 (25 bp)
CAGTAGTGACTGGTTGCTCCATGGA
LOC_Os01g22010
Os.12223.1.S1_at--1047--6911NONE
GTAGCAAGCCAGAGTTTTAGTGTTC
NONE
Os.12223.1.S1_at--685--4751Chr01:12346475..12346499 (25 bp)
GCTGAAACTGCAAGAGAGCTCTGCA
LOC_Os01g22010
Os.12223.1.S1_at--204--1591Chr01:12346459..12346483 (25 bp)
AGCTCTGCAGTTTGCTCTATCAGTT
LOC_Os01g22010
Target Sequence 
CCGGGATGATGACCATCAACCTCGACCTCAAGAGGGGCGGCAACCGGTTCATCAAGACCGCGGCGTACGGCCATTTCGGC
CGCGAGGATCCCGACTTCACATGGGAGGTTGTCAAGCCGCTCAAGTATGAGAAGGCATCTTCCTGAGGAAGAAGATAAAG
ATGATGACCATGAGAGGGGGGTCTCTCTCTCGCTATCTANNNNCCTCCATTGCCGGCCGTTGTCGGCGCCGCCGCCGCCT
ACCTGATGTGTCTTTGATCAGTAGTGACTGGTTGCTCCATGGAAGAAGAAGAAGATGGGAAGATGATGAAAGGGTTGAAA
TCGACTTGCGAAGTTGCTAGTGATATCGGTGTAGCAAGCCAGAGTTTTAGTGTTCNGATATCTTCGGCGTTTTATCCTTT
TTTCATTTTTTTGAGTCAGCTGAAACTGCAAGAGAGCTCTGCAGTTTGCTCTATCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis