Browse Element(s) Details


Os.31286.1.S1_at

Description gb:AK107583.1
DB_XREF= gi:32992792
TID=Os.31286.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0426D06.24 (P0426D06.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-130-E06, full insert sequence.
FL= gb:AK107583.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2200010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21960Os.8963.1.S1_at10/111+12309027..12314227Protein kinase domain containing protein, expressed
LOC_Os01g21970Os.9394.1.S1_at11/111+12315276..12319708Protein kinase domain containing protein, expressed
LOC_Os01g21980OsAffx.11154.1.S1_x_at11/111+12322270..12322705hypothetical protein
LOC_Os01g21980OsAffx.11154.2.S1_s_at11/111+12322270..12322705hypothetical protein
LOC_Os01g21990Os.23135.1.A1_at11/111+12326941..12333707CRS2-associated factor 2, putative, expressed
LOC_Os01g22000Os.31286.1.S1_at10/111+12334153..12335544expressed protein
LOC_Os01g22010Os.12223.1.S1_at10/111+12346190..12348795S-adenosylmethionine synthetase 2, putative, expressed
LOC_Os01g22030OsAffx.23332.1.S1_at8/111+12354422..12354787hypothetical protein
LOC_Os01g22039OsAffx.23333.1.S1_at11/111+12358077..12360921hypothetical protein
LOC_Os01g22039OsAffx.23333.2.S1_x_at10/111+12358077..12360921hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31286.1.S1_at--1127--9931Chr01:12334719..12334743 (25 bp)
TACGACCCTAGGACACCGATTGTAG
LOC_Os01g22000
Os.31286.1.S1_at--1045--851NONE
ATGGCCTAACTCCTTAAGTCTCAAG
NONE
Os.31286.1.S1_at--540--91Chr01:12334557..12334581 (25 bp)
ATTCCTCCGCAATCGTTATGGCTGA
LOC_Os01g22000
Os.31286.1.S1_at--113--10111Chr01:12334541..12334565 (25 bp)
TATGGCTGACCTTGAGCAGGCTATC
LOC_Os01g22000
Os.31286.1.S1_at--315--3491Chr01:12334525..12334549 (25 bp)
CAGGCTATCCTGCTTGTCTTAGACT
LOC_Os01g22000
Os.31286.1.S1_at--736--10671Chr01:12334512..12334536 (25 bp)
TTGTCTTAGACTCCCCTGTAACGGT
LOC_Os01g22000
Os.31286.1.S1_at--883--7051Chr01:12334495..12334519 (25 bp)
GTAACGGTCGTCAGCTCGCCTCAGA
LOC_Os01g22000
Os.31286.1.S1_at--519--9311Chr01:12334448..12334472 (25 bp)
TCCCTGGTCGTGTGTACCGAGGCGC
LOC_Os01g22000
Os.31286.1.S1_at--918--3571Chr01:12334345..12334369 (25 bp)
CATATCGCTGAGGTGTTGGTGCCAG
LOC_Os01g22000
Os.31286.1.S1_at--1162--3191Chr01:12334231..12334255 (25 bp)
CAATGACGTATGGATCTCGCTATCA
LOC_Os01g22000
Os.31286.1.S1_at--126--9511Chr01:12334217..12334241 (25 bp)
TCTCGCTATCATACTCGCAACGAAG
LOC_Os01g22000
Target Sequence 
TACGACCCTAGGACACCGATTGTAGATGGCCTAACTCCTTAAGTCTCAAGCCACTGCATTCCCCACTGCGTGAGCGCCCG
CCATCATCGTCGTCACGCCTCCGCCATCATCCTCACCTCCTCCGCCTCCCCTTGCACCGCTGTCCCCTTTGCTCCACCCC
AGATTCCTCCGCAATCGTTATGGCTGACCTTGAGCAGGCTATCCTGCTTGTCTTAGACTCCCCTGTAACGGTCGTCAGCT
CGCCTCAGACTCCCCTGTAACGGTCATCACCTCCCTGGTCGTGTGTACCGAGGCGCTCGCCTACTATGTCAGCGCCTGCG
ACGAGACCCTGCCATCGTCGTTTCTCCATGCACCGTCATCTCCACCTTCGCCTCCATATCGCTGAGGTGTTGGTGCCAGC
ATGCCGCCGCTGGTGGGTGGTGTACAGCTAGAGGATGGAGGTTTGGAGACAGTGGTTGAGAGGAAGGTGAAGGGAGGAAG
GAGTGAAACAATGACGTATGGATCTCGCTATCATACTCGCAACGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis