Browse Element(s) Details


OsAffx.23332.1.S1_at

Description gb:NM_183796.1
DB_XREF= gi:34894719
GEN=OSJNBa0011P19.6
TID=OsAffx.23332.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0011P19.6 (OSJNBa0011P19.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g220308/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21990Os.23135.1.A1_at11/111+12326941..12333707CRS2-associated factor 2, putative, expressed
LOC_Os01g22000Os.31286.1.S1_at10/111+12334153..12335544expressed protein
LOC_Os01g22010Os.12223.1.S1_at10/111+12346190..12348795S-adenosylmethionine synthetase 2, putative, expressed
LOC_Os01g22030OsAffx.23332.1.S1_at8/111+12354422..12354787hypothetical protein
LOC_Os01g22039OsAffx.23333.1.S1_at11/111+12358077..12360921hypothetical protein
LOC_Os01g22039OsAffx.23333.2.S1_x_at10/111+12358077..12360921hypothetical protein
LOC_Os01g22050Os.46012.2.S1_x_at3/111+12364209..12371647retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22050Os.46012.3.S1_x_at2/111+12364209..12371647retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22050Os.27088.1.A1_x_at2/111+12364209..12371647retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g22070Os.5189.2.S1_at8/111+12376503..12379688transposon protein, putative, Mutator sub-class
LOC_Os01g22070Os.5189.1.S1_at7/111+12376503..12379688transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23332.1.S1_at--640--4211Chr01:12356704..12356728 (25 bp)
CCGCCGGAGACGATGTGCTCGTAGA
NONE
OsAffx.23332.1.S1_at--134--7651Chr01:12356641..12356665 (25 bp)
GGGAGCACGATGCAGCTCTCGCCCT
NONE
OsAffx.23332.1.S1_at--494--1291Chr01:12354806..12354830 (25 bp)
AGATCCCTCGCTTGCGGGCGAGCAC
NONE
OsAffx.23332.1.S1_at--1144--10571Chr01:12354749..12354773 (25 bp)
TTCTCGCCGTCGCTTGTGGCAGCTG
LOC_Os01g22030
OsAffx.23332.1.S1_at--870--1591Chr01:12354729..12354753 (25 bp)
AGCTGCGGTGGGACCTACAAGCACT
LOC_Os01g22030
OsAffx.23332.1.S1_at--674--8071Chr01:12354719..12354743 (25 bp)
GGACCTACAAGCACTGGGCAGGCCG
LOC_Os01g22030
OsAffx.23332.1.S1_at--543--3491Chr01:12354701..12354725 (25 bp)
CAGGCCGCCTCAAGGAGATGTAGGA
LOC_Os01g22030
OsAffx.23332.1.S1_at--159--10631Chr01:12354610..12354634 (25 bp)
TTCGTCAACCAGTACTCCCTCATGT
LOC_Os01g22030
OsAffx.23332.1.S1_at--802--3951Chr01:12354574..12354598 (25 bp)
CGGAGCCTCAACGACAACAACATGT
LOC_Os01g22030
OsAffx.23332.1.S1_at--238--711Chr01:12354553..12354577 (25 bp)
ATGTCGAGTTATCTGTCGGATCCGG
LOC_Os01g22030
OsAffx.23332.1.S1_at--855--2951Chr01:12354512..12354536 (25 bp)
AAGGCCGTGGAAGTCACCGAGCCAG
LOC_Os01g22030
Target Sequence 
CCGCCGGAGACGATGTGCTCGTAGAAAGGTGGCAATGGCGCGTGCGCTGCGTCCTGTGTCGCGGGGAGCACGATGCAGCT
CTCGCCCTCGGCCGGCAGCGAACGGAGTTGGAGGAAGAAGGGTGCCGTGCAGATCCCTCGCTTGCGGGCGAGCACGTGAA
GAGAGGGAGAAGGATGGCGGCTAGCCCTTCTCGCCGTCGCTTGTGGCAGCTGCGGTGGGACCTACAAGCACTGGGCAGGC
CGCCTCAAGGAGATGTAGGAATCGAGGTCGCCGCAAGCAAAGGGGAGCGAGAAGGGCGAATAGGGCAGCGGGCAGCGGAG
GACCTCTTCGTCAACCAGTACTCCCTCATGTCCGACGGCTACCGGAGCCTCAACGACAACAACATGTCGAGTTATCTGTC
GGATCCGGCAACGACGGCCGCACCAAGGCCGTGGAAGTCACCGAGCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23332.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis