Browse Element(s) Details


Os.23135.1.A1_at

Description gb:CA760263
DB_XREF= gi:25804302
DB_XREF=BR060010A21C02.ab1
CLONE=BR060010A21C02.ab1
TID=Os.23135.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23135 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0426D06.23 (P0426D06.23), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2199011/11CRS2-associated factor 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21960Os.8963.1.S1_at10/111+12309027..12314227Protein kinase domain containing protein, expressed
LOC_Os01g21970Os.9394.1.S1_at11/111+12315276..12319708Protein kinase domain containing protein, expressed
LOC_Os01g21980OsAffx.11154.1.S1_x_at11/111+12322270..12322705hypothetical protein
LOC_Os01g21980OsAffx.11154.2.S1_s_at11/111+12322270..12322705hypothetical protein
LOC_Os01g21990Os.23135.1.A1_at11/111+12326941..12333707CRS2-associated factor 2, putative, expressed
LOC_Os01g22000Os.31286.1.S1_at10/111+12334153..12335544expressed protein
LOC_Os01g22010Os.12223.1.S1_at10/111+12346190..12348795S-adenosylmethionine synthetase 2, putative, expressed
LOC_Os01g22030OsAffx.23332.1.S1_at8/111+12354422..12354787hypothetical protein
LOC_Os01g22039OsAffx.23333.1.S1_at11/111+12358077..12360921hypothetical protein
LOC_Os01g22039OsAffx.23333.2.S1_x_at10/111+12358077..12360921hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23135.1.A1_at--96--5331Chr01:12333126..12333150 (25 bp)
GAAGTGGATGCTCTTACACCTGATT
LOC_Os01g21990
Os.23135.1.A1_at--1093--6171Chr01:12333168..12333192 (25 bp)
GAGGACTTCAGTGTTACATCTCAGG
LOC_Os01g21990
Os.23135.1.A1_at--143--5491Chr01:12333198..12333222 (25 bp)
GAACATTCATTTCCAGCTGTGCTTG
LOC_Os01g21990
Os.23135.1.A1_at--1075--5231Chr01:12333234..12333258 (25 bp)
GAATCAAACCCAGATGTCCTAAATG
LOC_Os01g21990
Os.23135.1.A1_at--822--331Chr01:12333263..12333287 (25 bp)
ATACACCGAAGATGAGCCTGAGACA
LOC_Os01g21990
Os.23135.1.A1_at--277--5991Chr01:12333282..12333306 (25 bp)
GAGACAGGTACACTTGAACCCCAAC
LOC_Os01g21990
Os.23135.1.A1_at--541--2091Chr01:12333361..12333385 (25 bp)
ACATGCTTAAGCGTTTGGAGTCATC
LOC_Os01g21990
Os.23135.1.A1_at--752--8551Chr01:12333376..12333400 (25 bp)
TGGAGTCATCAGTCCCATTGGGAGC
LOC_Os01g21990
Os.23135.1.A1_at--446--8071Chr01:12333396..12333420 (25 bp)
GGAGCATTACCGATCGACGCAGTGG
LOC_Os01g21990
Os.23135.1.A1_at--307--7612Chr01:12333487..12333511 (25 bp)
GGGCAATGACCTGCAATCACAAATA
LOC_Os01g21990
Os.23135.1.A1_at--603--10671Chr01:12333521..12333545 (25 bp)
TTCCACCTTTCAGTCCGATCAATAA
LOC_Os01g21990
Target Sequence 
GAAGTGGATGCTCTTACACCTGATTCCCTTCTTACAAGGGTAGAGGACTTCAGTGTTACATCTCAGGNTGTCGAACATTC
ATTTCCAGCTGTGCTTGTGGCCAATGATGAATCAAACCCAGATGTCCTAAATGCTGAATACACCGAAGATGAGCCTGAGA
CAGGTACACTTGAACCCCAACAACATGAGTTTACAGAATCTTNTGATGTCGCAGAGGATNATCATTTCGAAGATGACATG
CTTAAGCGTTTGGAGTCATCAGTCCCATTGGGAGCATTACCGATCGACGCAGTGGTAAAACAGTTGAATGATGAGTGAAT
TATATTACCAAACAATCATGAATTCAGTGTTCAGTCCAATGGGGCAATGACCTGCAATCACAAATACAGCGCACATTCCA
CCTTTCAGTCCGATCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23135.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis