Browse Element(s) Details


Os.8963.1.S1_at

Description gb:AK100396.1
DB_XREF= gi:32985605
TID=Os.8963.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative protein kinase (P0426D06.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023086G18, full insert sequence.
FL= gb:AK059381.1 gb:AK100396.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2196010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21940Os.1113.1.S1_at11/111+12285670..12291916Will die slowly protein, putative, expressed
LOC_Os01g21940Os.38429.1.S1_at1/111+12285670..12291916Will die slowly protein, putative, expressed
LOC_Os01g21950NANA1+12299256..12299742hypothetical protein
LOC_Os01g21960Os.8963.1.S1_at10/111+12309027..12314227Protein kinase domain containing protein, expressed
LOC_Os01g21970Os.9394.1.S1_at11/111+12315276..12319708Protein kinase domain containing protein, expressed
LOC_Os01g21980OsAffx.11154.1.S1_x_at11/111+12322270..12322705hypothetical protein
LOC_Os01g21980OsAffx.11154.2.S1_s_at11/111+12322270..12322705hypothetical protein
LOC_Os01g21990Os.23135.1.A1_at11/111+12326941..12333707CRS2-associated factor 2, putative, expressed
LOC_Os01g22000Os.31286.1.S1_at10/111+12334153..12335544expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8963.1.S1_at--775--3051Chr01:12313491..12313515 (25 bp)
AATCGGATGACCCAATTCCTCGTGG
LOC_Os01g21960
Os.8963.1.S1_at--302--8071Chr01:12313752..12313776 (25 bp)
GGAGCACCGAAATGGATTCCCAAAG
LOC_Os01g21960
Os.8963.1.S1_at--660--1031Chr01:12313775..12313799 (25 bp)
AGGGACAACAACTCCGACACGGACA
LOC_Os01g21960
Os.8963.1.S1_at--630--5611Chr01:12313796..12313820 (25 bp)
GACAAGAGTGACAATCCAGATTCCA
LOC_Os01g21960
Os.8963.1.S1_at--688--91Chr01:12313867..12313891 (25 bp)
ATTCCTCTCCTATTATATTCCTTTG
LOC_Os01g21960
Os.8963.1.S1_at--273--10191Chr01:12313880..12313904 (25 bp)
TATATTCCTTTGGTCCATAACGGAC
LOC_Os01g21960
Os.8963.1.S1_at--618--4291Chr01:12313912..12313936 (25 bp)
CCTCTGTTTCTGCTGACGAATTGGT
LOC_Os01g21960
Os.8963.1.S1_at--296--31Chr01:12313931..12313955 (25 bp)
ATTGGTAACCGCCATTGCTGAAGCT
LOC_Os01g21960
Os.8963.1.S1_at--340--5611Chr01:12313977..12314001 (25 bp)
GACACATTGGTTCTCATTCCTTTTT
LOC_Os01g21960
Os.8963.1.S1_at--115--5231Chr01:12314161..12314185 (25 bp)
GAATACTGGTCGAACCCGAATATTT
LOC_Os01g21960
Os.8963.1.S1_at--106--10091Chr01:12314206..12314230 (25 bp)
TTGGAAGCCTCTGCCCGTTTTGAAA
NONE
Target Sequence 
AATCGGATGACCCAATTCCTCGTGGGGACAGAAGATCTAAGCACAACCGTGGAGGGAGCACCGAAATGGATTCCCAAAGG
GACAACAACTCCGACACGGACAAGAGTGACAATCCAGATTCCAAACCAAGCAGGAGCAGAGCCTCATCTTCCAAATGAGA
ACATCCAGCATTCCTCTCCTATTATATTCCTTTGGTCCATAACGGACCGTCCCCCCTCTGTTTCTGCTGACGAATTGGTA
ACCGCCATTGCTGAAGCTTGAATACAAAAGAAGCTCGAAGACACATTGGTTCTCATTCCTTTTTTTTCTTCTTTTTCGTG
GCTGTAACGGTTTATGATTTATTTGTAGACAAGGTGTTGGTTTTTCTACTTATGAATTTATATATATATATACATATACT
TAACGGTGGTCTTGACAATTTGTTGTTGTAAGTTTTTAACAGTGTGTACAGTTGTAGCATTATGAATACTGGTCGAACCC
GAATATTTGTGAATGATATATATTCCAATTGGAAGCCTCTGCCCGTTTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis