Browse Element(s) Details


OsAffx.20565.1.S1_at

Description gb:NM_195593.1
DB_XREF= gi:37532545
TID=OsAffx.20565.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0036B06.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1669011/11retrotransposon protein, putative, unclassified
LOC_Os07g276902/11retrotransposon protein, putative, unclassified
LOC_Os09g072502/11retrotransposon protein, putative, unclassified
LOC_Os08g135602/11retrotransposon protein, putative, unclassified
LOC_Os06g333002/11retrotransposon protein, putative, unclassified
LOC_Os09g082401/11retrotransposon protein, putative, unclassified
LOC_Os12g235401/11retrotransposon protein, putative, unclassified
LOC_Os04g148701/11retrotransposon protein, putative, unclassified
LOC_Os03g316401/11retrotransposon protein, putative, unclassified
LOC_Os11g220201/11retrotransposon protein, putative, unclassified
LOC_Os04g177201/11retrotransposon protein, putative, unclassified
LOC_Os11g287901/11retrotransposon protein, putative, unclassified
LOC_Os04g011901/11retrotransposon protein, putative, unclassified
LOC_Os07g182001/11retrotransposon protein, putative, unclassified
LOC_Os09g231301/11retrotransposon protein, putative, unclassified
LOC_Os01g664501/11retrotransposon protein, putative, unclassified
LOC_Os11g294501/11retrotransposon protein, putative, unclassified
LOC_Os04g097101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g16640Os.7089.2.S1_at11/1110+7963867..7977690expressed protein
LOC_Os10g16640Os.7089.1.S1_at11/1110+7963867..7977690expressed protein
LOC_Os10g16650OsAffx.8319.1.S1_at10/1110+7977852..7979280retrotransposon, putative, centromere-specific
LOC_Os10g16650OsAffx.8319.1.S1_x_at10/1110+7977852..7979280retrotransposon, putative, centromere-specific
LOC_Os10g16660NANA10+7980816..7981264retrotransposon protein, putative, unclassified
LOC_Os10g16670Os.31312.5.S1_x_at3/1110+7981892..7985276retrotransposon protein, putative, unclassified
LOC_Os10g16670Os.31312.2.S1_x_at2/1110+7981892..7985276retrotransposon protein, putative, unclassified
LOC_Os10g16670Os.28943.1.S1_x_at1/1110+7981892..7985276retrotransposon protein, putative, unclassified
LOC_Os10g16680NANA10+7986202..7986573retrotransposon protein, putative, unclassified
LOC_Os10g16690OsAffx.20565.1.S1_at11/1110+7989325..7992182retrotransposon protein, putative, unclassified
LOC_Os10g16700NANA10+7992682..7993329retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16720Os.27691.1.S1_x_at1/1110+7998400..8003916retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16740NANA10+8008499..8009335hypothetical protein
LOC_Os10g16750OsAffx.22722.1.S1_x_at1/1110+8009983..8015143retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g16760Os.46306.1.S1_x_at4/1110+8016719..8020141transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20565.1.S1_at--552--10732Chr10:7991185..7991209 (25 bp)
TTGAAAAAGGCTCTCGGCCAAGCCA
LOC_Os10g16690
OsAffx.20565.1.S1_at--951--7132Chr10:7991213..7991586 (25 bp)
GTCTTGTAAATATCTCCGAGCTGGA
LOC_Os10g16690
OsAffx.20565.1.S1_at--480--4839Chr11:16187796..16187901 (25 bp)
GCTCAATTCGACGTCTTGGTTAACA
LOC_Os11g28790
OsAffx.20565.1.S1_at--439--10034Chr10:7991804..7991828 (25 bp)
TAGAGATGAGGTCGCCAACGCCGCT
LOC_Os10g16690
OsAffx.20565.1.S1_at--1053--819Chr10:7991863..7991887 (25 bp)
ATGGTCCGAGTTCATTTGATGCTGA
LOC_Os10g16690
OsAffx.20565.1.S1_at--715--2251Chr10:7991951..7991975 (25 bp)
AAATATGGGAGCAGGCCTGGCGCTT
LOC_Os10g16690
OsAffx.20565.1.S1_at--375--891Chr10:7991963..7991987 (25 bp)
AGGCCTGGCGCTTGCGATGACCAAA
LOC_Os10g16690
OsAffx.20565.1.S1_at--242--6491Chr10:7992002..7992026 (25 bp)
GATAGACATTGAAGCCGTTGACGGT
LOC_Os10g16690
OsAffx.20565.1.S1_at--855--4031Chr10:7992017..7992041 (25 bp)
CGTTGACGGTTTTGCAGATGGGACA
LOC_Os10g16690
OsAffx.20565.1.S1_at--1113--591Chr10:7992082..7992106 (25 bp)
ATGCCGCCAACAAGATAGCTGCTGA
LOC_Os10g16690
OsAffx.20565.1.S1_at--617--2331Chr10:7992115..7992139 (25 bp)
AAAGATTCCAGGAGACCGACCTCAG
LOC_Os10g16690
Target Sequence 
TTGAAAAAGGCTCTCGGCCAAGCCACTCGTCTTGTAAATATCTCCGAGCTGGAAAGGCGAGTTAAAGCTCTAGAAAAAGA
CAAGGCTGAACTGACGAAGCAAAGGGACTCGGCCCTGAAGGACGTTGAAGATCACAAAATCAAATCCCAAGCTCAATTCG
ACGTCTTGGTTAACAAAATCAAGAGTCTTGAAGGAGCTAGAGATGAGGTCGCCAACGCCGCTACACCACTCGTCCAAGCC
ATGTTCTTCAATAACAATGGTCCGAGTTCATTTGATGCTGACGAAATCTTCGACAAGCTGAGAATTGCTCCGGATACATA
TTTTAAGAATATCAAGGAGGCTAGAAATATGGGAGCAGGCCTGGCGCTTGCGATGACCAAATCCTTGTACCCAAAGATAG
ACATTGAAGCCGTTGACGGTTTTGCAGATGGGACAAGCGAAGAAGCTGCTCTTGATCTCATCAGTGAAGCTAAAAATGCC
GCCAACAAGATAGCTGCTGATGTTGTTGAAAGATTCCAGGAGACCGACCTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis