Browse Element(s) Details


OsAffx.20607.1.S1_at

Description tigr:9638.m01202
TID=OsAffx.20607.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1365011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13630Os.23339.1.A1_at8/1110+7150938..7160271expressed protein
LOC_Os10g13630Os.41248.2.A1_at2/1110+7150938..7160271expressed protein
LOC_Os10g13650OsAffx.20607.1.S1_at11/1110+7173929..7176395hypothetical protein
LOC_Os10g13660OsAffx.18247.1.S1_at11/1110+7177311..7178909hypothetical protein
LOC_Os10g13670Os.8029.1.S1_at11/1110+7179868..7184734RING zinc finger protein, putative, expressed
LOC_Os10g13680OsAffx.8359.1.S1_at11/1110+7188762..7190948retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.27518.1.S1_at11/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.27518.3.S1_x_at4/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690Os.52249.1.S1_at1/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g13690OsAffx.22180.1.S1_at1/1110+7192929..7199972retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20607.1.S1_at--692--5533Chr10:7175079..7175103 (25 bp)
GAAACTTGACTACCTTCGATCTAGA
LOC_Os10g13650
OsAffx.20607.1.S1_at--941--5691Chr10:7175086..7175110 (25 bp)
GACTACCTTCGATCTAGATTCTATT
LOC_Os10g13650
OsAffx.20607.1.S1_at--448--451Chr10:7175097..7175121 (25 bp)
ATCTAGATTCTATTGGCATGGGCAT
LOC_Os10g13650
OsAffx.20607.1.S1_at--545--8271Chr10:7175111..7175135 (25 bp)
GGCATGGGCATGGATATAAGAATAA
LOC_Os10g13650
OsAffx.20607.1.S1_at--1046--311Chr10:7175136..7175160 (25 bp)
ATACTGGCTTGCTAAGTGGGTCATT
LOC_Os10g13650
OsAffx.20607.1.S1_at--635--7491Chr10:7175151..7175175 (25 bp)
GTGGGTCATTATATGTCATCCCAAA
LOC_Os10g13650
OsAffx.20607.1.S1_at--1160--751Chr10:7175163..7175183 (21 bp)
ATGTCATCCCAAAGATCCAGGGTGT
LOC_Os10g13650
OsAffx.20607.1.S1_at--931--5851Chr10:7175793..7175813 (21 bp)
GATCCAGGGTGTAACTCTAACCAAG
LOC_Os10g13650
OsAffx.20607.1.S1_at--778--7711Chr10:7175795..7175819 (25 bp)
GGGTGTAACTCTAACCAAGGATAAT
LOC_Os10g13650
OsAffx.20607.1.S1_at--282--4391Chr10:7175809..7175833 (25 bp)
CCAAGGATAATCTAGCTAAGCGCAA
LOC_Os10g13650
OsAffx.20607.1.S1_at--987--10471Chr10:7176184..7176208 (25 bp)
TTACAGTGGTAATCGCGACATTTGG
LOC_Os10g13650
Target Sequence 
GAAACTTGACTACCTTCGATCTAGATTCTATTGGCATGGGCATGGATATAAGAATAAATACTGGCTTGCTAAGTGGGTCA
TTATATGTCATCCCAAAGATCCAGGGTGTAACTCTAACCAAGGATAATCTAGCTAAGCGCAAATGGAAAGGTGGTTATTA
CTTTAGTCACCCGGTGGATTCGCACCTGGGCTATCCTTCACAAACCGGGTCTTCGGATACTATTACAGTGGTAATCGCGA
CATTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20607.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis