Browse Element(s) Details


OsAffx.20668.1.S1_at

Description tigr:9638.m00879
TID=OsAffx.20668.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1006011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10030OsAffx.30368.1.S1_at11/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10030Os.50043.1.A1_at1/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10030Os.57516.1.A1_at1/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10040OsAffx.6629.1.S1_at11/1110+5227474..5233312Cytochrome P450 family protein
LOC_Os10g10050OsAffx.30369.1.S1_at11/1110+5235877..5236083expressed protein
LOC_Os10g10050OsAffx.30369.1.S1_x_at11/1110+5235877..5236083expressed protein
LOC_Os10g10060OsAffx.20668.1.S1_at11/1110+5237005..5237548hypothetical protein
LOC_Os10g10080Os.22635.1.S1_s_at11/1110+5253084..5256529exostosin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20668.1.S1_at--650--7171Chr10:5237443..5237467 (25 bp)
GTCTGAAACCAAATGGCAGGCTCCT
LOC_Os10g10060
OsAffx.20668.1.S1_at--160--6251Chr10:5237391..5237415 (25 bp)
GATGGAGCCTTCGTTTCACAGACCA
LOC_Os10g10060
OsAffx.20668.1.S1_at--155--671Chr10:5237333..5237357 (25 bp)
ATGAATGCAATGTCCTTCTCTCTGC
LOC_Os10g10060
OsAffx.20668.1.S1_at--538--5391Chr10:5237268..5237292 (25 bp)
GAAGCTACAGCTTGCCGTGACGTGA
LOC_Os10g10060
OsAffx.20668.1.S1_at--775--371Chr10:5237214..5237238 (25 bp)
ATCAAGATGCCGCTGATCCTCGAAA
LOC_Os10g10060
OsAffx.20668.1.S1_at--164--8851Chr10:5237201..5237225 (25 bp)
TGATCCTCGAAACGGACTGTGCAAA
LOC_Os10g10060
OsAffx.20668.1.S1_at--824--731Chr10:5237177..5237201 (25 bp)
ATGTTAGCAGTGTCCTGAAGGCGAC
LOC_Os10g10060
OsAffx.20668.1.S1_at--1104--2731Chr10:5237150..5237174 (25 bp)
AAGAAGATAGATCCCAGCTCTGGAA
LOC_Os10g10060
OsAffx.20668.1.S1_at--628--151Chr10:5237107..5237131 (25 bp)
ATTAGCTTTAGCTTTGTCTCACAAG
LOC_Os10g10060
OsAffx.20668.1.S1_at--842--3211Chr10:5237086..5237110 (25 bp)
CAAGTATCAGATTGTCTCCGTACCA
LOC_Os10g10060
OsAffx.20668.1.S1_at--22--9991Chr10:5237066..5237090 (25 bp)
TACCAATTCGTCCACGGTATGGCGT
LOC_Os10g10060
Target Sequence 
GTCTGAAACCAAATGGCAGGCTCCTCCGTCGGGTTGGGCCAAAATAAACGTCGATGGAGCCTTCGTTTCACAGACCAGCA
AAGGTAGTGTGGGGATTGTTATTCGAGACCATGAATGCAATGTCCTTCTCTCTGCTTGGAGCGTCATGAGATATTGCACG
TCGGCAGAGGAAGTGGAAGCTACAGCTTGCCGTGACGTGATGGTGTTAATTAAGCTGGCGAATGAATGGATCAAGATGCC
GCTGATCCTCGAAACGGACTGTGCAAATGTTAGCAGTGTCCTGAAGGCGACAGAAGAAGATAGATCCCAGCTCTGGAATA
TTTTTCAGGAAGCAAGATTAGCTTTAGCTTTGTCTCACAAGTATCAGATTGTCTCCGTACCAATTCGTCCACGGTATGGC
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis